diff options
| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-10-14 13:12:16 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-10-27 15:24:06 +0200 |
| commit | 9f8ab16fb538b3f0721ab7b188e9997e8440058d (patch) | |
| tree | 43607a37488930feeb8bb6994904faa66df54b35 | |
| parent | f180a5990b133790fbf7f60fb9c9ea4f8fa98f08 (diff) | |
gnu: Add r-tximportdata.
* gnu/packages/bioconductor.scm (r-tximportdata): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 65df5d1f11..b45da78f68 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1628,6 +1628,30 @@ cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and contro TCGAbiolinksGUI package.") (license license:gpl3))) +(define-public r-tximportdata + (package + (name "r-tximportdata") + (version "1.24.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "tximportData" version + 'experiment)) + (sha256 + (base32 + "0mgbwpybg2xd6x1ijrflmjh5w63qz6ylnzszbbyp437n618m7riy")))) + (properties `((upstream-name . "tximportData"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/tximportData") + (synopsis "Data for the tximport package") + (description + "This package provides the output of running various transcript abundance +quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project. The +quantifiers were @code{Cufflinks}, @code{RSEM}, @code{kallisto}, @code{Salmon} +and @code{Sailfish}. Alevin example output is also included.") + (license license:gpl2+))) + + ;;; Packages |