diff options
author | nafkhamdc <navid.afkhami@mdc-berlin.de> | 2024-05-03 09:19:33 +0000 |
---|---|---|
committer | Ricardo Wurmus <rekado@elephly.net> | 2024-05-06 00:06:19 +0200 |
commit | a710ebec1d70d78dd8b84689388a0b670aafa745 (patch) | |
tree | 44f52377bb02ee3dde76538f7511e5f5bbcb9c9a | |
parent | a4ad0a46efcea17390e0f6e3a9568597dab7af80 (diff) |
gnu: Add r-memes.
* gnu/packages/bioconductor.scm (r-memes): New variable.
Change-Id: Ibdf5173d35ef81d27da6831148e66be83f856deb
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
-rw-r--r-- | gnu/packages/bioconductor.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0fca094977..1a8d9b91d2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2092,6 +2092,54 @@ gene expression indicate a role for enhancer priming in immune response\", publi in Nature Genetics, January 2018.") (license license:gpl2+))) +;; This is available only in the devel branch of Bioconductor. +(define-public r-memes + (let ((commit "55f0df1fe65c8ead5252542fdc0da0ff2339049e") + (revision "1")) + (package + (name "r-memes") + (version (git-version "1.11.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/snystrom/memes") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0mp3a610v293prmyid3w1w8fkjkppjnim60h7p9vz2884d0wdvk4")))) + (properties `((upstream-name . "memes"))) + (build-system r-build-system) + (propagated-inputs (list r-biostrings + r-cmdfun + r-dplyr + r-genomicranges + r-ggplot2 + r-ggseqlogo + r-magrittr + r-matrixstats + r-patchwork + r-processx + r-purrr + r-readr + r-rlang + r-tibble + r-tidyr + r-universalmotif + r-usethis + r-xml2)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/snystrom/memes") + (synopsis + "Motif matching, comparison, and de novo discovery using the MEME Suite") + (description + "This package facilitates motif analysis using MEME Suite tools. +Memes provides data aware utilities for using GRanges objects as +entrypoints to motifanalysis, data structures for examining & editing +motif lists, and novel data visualizations. Memes functions and data +structures are amenable to both base R and tidyverse workflows.") + (license license:expat)))) + (define-public r-methylclockdata (package (name "r-methylclockdata") |