diff options
| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-11-09 04:13:31 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-11-09 09:55:14 +0100 |
| commit | b4e3e02fd1232ee965c5c25c118fc8b0f6faa9de (patch) | |
| tree | 9a578b13678360700c02608f72be080a935c6284 | |
| parent | 5e0aa623088abf460a0dcc557de6fec61f8531da (diff) | |
gnu: Add r-pando.
* gnu/packages/bioinformatics.scm (r-pando): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 47f5574eeb..a8ebd62331 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7600,6 +7600,55 @@ tasks.") Pore-C concatemers.") (license license:gpl3)))) +(define-public r-pando + (package + (name "r-pando") + (version "1.0.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/quadbiolab/Pando") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0c83anzdrbvg47p9xns2bxpjlx5z328can3jmzilw6rygwp7hyii")))) + (properties `((upstream-name . "Pando"))) + (build-system r-build-system) + (propagated-inputs + (list r-bayestestr + r-brms + r-foreach + r-genomicranges + r-ggplot2 + r-ggpointdensity + r-ggraph + r-glmnetutils + r-iranges + r-irlba + r-matrix + r-motifmatchr + r-pals + r-patchwork + r-seurat + r-signac + r-sparsematrixstats + r-tfbstools + r-tidygraph + r-tidyverse + r-uwot + r-xgboost)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/quadbiolab/Pando") + (synopsis "Infer regulomes from multi-modal single-cell genomics data") + (description + "Pando leverages multi-modal single-cell measurements to infer gene +regulatory networks using a flexible linear model-based framework. By +modeling the relationship between TF-binding site pairs with the expression of +target genes, Pando simultaneously infers gene modules and sets of regulatory +regions for each transcription factor.") + (license license:expat))) + (define-public r-presto (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad") (revision "0")) |