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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-03-19 14:39:21 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-03-19 14:39:21 +0100 |
| commit | f3958db4ad24bb35213d1022de582c4f51720602 (patch) | |
| tree | b75b130a44515b916bdb710c0f95fc06d53c3445 | |
| parent | 8b8e7971ba14b8bb8249ac4e133670bc87e3adb0 (diff) | |
gnu: snakemake-5: Use G-expression.
* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Use #$output instead
of referencing "out" in outputs.
Change-Id: Ie3d6d5788c4db4060e26079cb81441f5bc6f08e8
| -rw-r--r-- | gnu/packages/python-xyz.scm | 25 |
1 files changed, 12 insertions, 13 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index c4a5375839..dc211ff782 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -12821,19 +12821,18 @@ approach.") (build-system python-build-system) (arguments ;; TODO: Package missing test dependencies. - '(#:tests? #f - #:phases - (modify-phases %standard-phases - ;; For cluster execution Snakemake will call Python. Since there is - ;; no suitable PYTHONPATH set, cluster execution will fail. We fix - ;; this by calling the snakemake wrapper instead. - (add-after 'unpack 'call-wrapper-not-wrapped-snakemake - (lambda* (#:key outputs #:allow-other-keys) - (substitute* "snakemake/executors/__init__.py" - (("\\{sys.executable\\} -m snakemake") - (string-append (assoc-ref outputs "out") - "/bin/snakemake"))) - #t))))) + (list + #:tests? #f + #:phases + #~(modify-phases %standard-phases + ;; For cluster execution Snakemake will call Python. Since there is + ;; no suitable PYTHONPATH set, cluster execution will fail. We fix + ;; this by calling the snakemake wrapper instead. + (add-after 'unpack 'call-wrapper-not-wrapped-snakemake + (lambda _ + (substitute* "snakemake/executors/__init__.py" + (("\\{sys.executable\\} -m snakemake") + (string-append #$output "/bin/snakemake")))))))) (propagated-inputs (list python-appdirs python-configargparse |