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authorRicardo Wurmus <rekado@elephly.net>2021-09-07 14:39:32 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-09-07 14:47:57 +0200
commit0d1990b98610b75e982f84ffb370daffe88fb66f (patch)
tree3bf6bfeb1561ca4e5f73cc4f9a8bcbabdfccf279 /gnu/packages/bioconductor.scm
parentb63fb6a2e64c46653c9888d072d5f46c09f52fdd (diff)
gnu: Add r-bsseq.
* gnu/packages/bioconductor.scm (r-bsseq): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm46
1 files changed, 46 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7391afa6d3..815efa1ae0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14510,6 +14510,52 @@ estimated efficient influence function. The procedure accommodates the use of
ensemble machine learning for the estimation of nuisance functions.")
(license license:expat)))
+(define-public r-bsseq
+ (package
+ (name "r-bsseq")
+ (version "1.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bsseq" version))
+ (sha256
+ (base32
+ "1xpv85hr681kkkilsnasndkszwmzbzq11y0lff4na2ilsm7sqmmi"))))
+ (properties `((upstream-name . "bsseq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-beachmat" ,r-beachmat)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-data-table" ,r-data-table)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-delayedmatrixstats" ,r-delayedmatrixstats)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-gtools" ,r-gtools)
+ ("r-hdf5array" ,r-hdf5array)
+ ("r-iranges" ,r-iranges)
+ ("r-limma" ,r-limma)
+ ("r-locfit" ,r-locfit)
+ ("r-permute" ,r-permute)
+ ("r-r-utils" ,r-r-utils)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rhdf5" ,r-rhdf5)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-scales" ,r-scales)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/hansenlab/bsseq")
+ (synopsis "Analyze, manage and store bisulfite sequencing data")
+ (description
+ "This package provides a collection of tools for analyzing and
+visualizing bisulfite sequencing data.")
+ (license license:artistic2.0)))
+
(define-public r-tximeta
(package
(name "r-tximeta")