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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-06-20 00:33:46 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-11-24 14:53:09 +0100
commit13e8930efb855f3332045f38b558fecab50ac7fa (patch)
treea2456262f9e485e376492d6c5a4b3c0bb08cc94e /gnu/packages/bioconductor.scm
parentf43a41d1966638b0b75a46276c76642cb89e3023 (diff)
gnu: Add r-arrayexpress.
* gnu/packages/bioconductor.scm (r-arrayexpress): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm25
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 19b17651b2..da7420d9f2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2472,6 +2472,31 @@ reproducible gene expression signatures capable of accurately distinguishing
tumor samples from healthy controls.")
(license license:artistic2.0)))
+(define-public r-arrayexpress
+ (package
+ (name "r-arrayexpress")
+ (version "1.56.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ArrayExpress" version))
+ (sha256
+ (base32
+ "0v2v7v0gim0bsg34ciplapz6mjih68yqhcgzdlhcyj2d6vrgiad5"))))
+ (properties `((upstream-name . "ArrayExpress")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-limma
+ r-oligo
+ r-xml))
+ (home-page "https://bioconductor.org/packages/ArrayExpress")
+ (synopsis "Building R objects from ArrayExpress datasets")
+ (description
+ "This package offers the possibility to access the ArrayExpress repository
+at @dfn{EBI} (European Bioinformatics Institute) and build Bioconductor data
+structures: @code{ExpressionSet}, @code{AffyBatch}, @code{NChannelSet}.")
+ (license license:artistic2.0)))
+
(define-public r-aseb
(package
(name "r-aseb")