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| author | Roel Janssen <roel@gnu.org> | 2021-05-26 23:54:14 +0200 |
|---|---|---|
| committer | Roel Janssen <roel@gnu.org> | 2021-05-26 23:54:14 +0200 |
| commit | 2fc74f3176f0aae1269ba9eb754f8d9eb7c3a848 (patch) | |
| tree | efcff72835e3edb601cf521182b3f1cd6bc03074 /gnu/packages/bioconductor.scm | |
| parent | 700b10f1810a90c49c0403cfec40ad3223cbe805 (diff) | |
gnu: Add r-clusterexperiment.
* gnu/packages/bioconductor.scm (r-clusterexperiment): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 39f2a81794..025faadf76 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5293,6 +5293,52 @@ All the visualization methods are developed based on ggplot2 graphics.") profiles (GO and KEGG) of gene and gene clusters.") (license license:artistic2.0))) +(define-public r-clusterexperiment + (package + (name "r-clusterexperiment") + (version "2.10.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "clusterExperiment" version)) + (sha256 + (base32 + "04n3lcm7dh07sjkzyv83m55mx3lz0lkcy8yq9hi0zywqyrhyzz7z")))) + (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-biocgenerics" ,r-biocgenerics) + ("r-cluster" ,r-cluster) + ("r-delayedarray" ,r-delayedarray) + ("r-edger" ,r-edger) + ("r-hdf5array" ,r-hdf5array) + ("r-howmany" ,r-howmany) + ("r-kernlab" ,r-kernlab) + ("r-limma" ,r-limma) + ("r-locfdr" ,r-locfdr) + ("r-matrix" ,r-matrix) + ("r-matrixstats" ,r-matrixstats) + ("r-mbkmeans" ,r-mbkmeans) + ("r-nmf" ,r-nmf) + ("r-phylobase" ,r-phylobase) + ("r-pracma" ,r-pracma) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rcpp" ,r-rcpp) + ("r-rspectra" ,r-rspectra) + ("r-s4vectors" ,r-s4vectors) + ("r-scales" ,r-scales) + ("r-singlecellexperiment" ,r-singlecellexperiment) + ("r-stringr" ,r-stringr) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-zinbwave" ,r-zinbwave))) + (home-page "https://bioconductor.org/packages/clusterExperiment/") + (synopsis "Compare clusterings for single-cell sequencing") + (description "This package provides functionality for running and comparing +many different clusterings of single-cell sequencing data or other large mRNA +expression data sets.") + (license license:artistic2.0))) + (define-public r-mlinterfaces (package (name "r-mlinterfaces") |