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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-06-17 11:42:01 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-07-01 10:28:21 +0200
commit4c294ae7fb7fbb881bff7fbc095a1072e7a2058b (patch)
tree5d66deb0ec3983a67e7bbd2f4e450b24f15b0b7c /gnu/packages/bioconductor.scm
parentb7e414982d4d47f3a0e42ea177b9797dc4880e91 (diff)
gnu: Add r-anaquin.
* gnu/packages/bioconductor.scm (r-anaquin): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm30
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 28000c70f1..3b8505c0ad 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2063,6 +2063,36 @@ This allows @code{AMARETTO} to identify novel cancer driver genes directing
canonical cancer pathways.")
(license license:asl2.0)))
+(define-public r-anaquin
+ (package
+ (name "r-anaquin")
+ (version "2.20.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Anaquin" version))
+ (sha256
+ (base32
+ "1jgpnls2djl1yzvnk64qc83mljmlci7wflwkza3wr0sv6r47b0dd"))))
+ (properties `((upstream-name . "Anaquin")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-deseq2
+ r-ggplot2
+ r-knitr
+ r-locfit
+ r-plyr
+ r-qvalue
+ r-rocr))
+ (native-inputs (list r-knitr))
+ (home-page "https://www.sequinstandards.com/")
+ (synopsis "Statistical analysis of sequins")
+ (description
+ "The project is intended to support the use of @dfn{sequins}(synthetic
+sequencing spike-in controls) owned and made available by the Garvan Institute
+of Medical Research. The goal is to provide a standard open source library for
+quantitative analysis, modelling and visualization of spike-in controls.")
+ (license license:bsd-3)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")