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authorRicardo Wurmus <rekado@elephly.net>2022-07-04 13:24:57 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-07-04 13:48:58 +0200
commit602cf66c797a54a5632211d2f4d00c02aa701f66 (patch)
tree2b2f1960946fc00202b25545f1e92819476957ab /gnu/packages/bioconductor.scm
parente05f62bf6aae0fea6afbdd8c0736970914c088f1 (diff)
gnu: Add r-dittoseq.
* gnu/packages/bioconductor.scm (r-dittoseq): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm44
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 387d21a404..38c309caa4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3854,6 +3854,50 @@ originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2):
1-15.")
(license license:lgpl3)))
+(define-public r-dittoseq
+ (package
+ (name "r-dittoseq")
+ (version "1.8.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "dittoSeq" version))
+ (sha256
+ (base32
+ "0vi0hcyffaxp6yxsrq95bdlrhr85dvbqm9c7rg6a6blkfgwhlzb4"))))
+ (properties `((upstream-name . "dittoSeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-colorspace
+ r-cowplot
+ r-ggplot2
+ r-ggrepel
+ r-ggridges
+ r-gridextra
+ r-pheatmap
+ r-reshape2
+ r-s4vectors
+ r-singlecellexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/dittoSeq")
+ (synopsis "Single-cell and bulk RNA sequencing visualization")
+ (description
+ "This package provides a universal, user friendly, single-cell and bulk RNA
+sequencing visualization toolkit that allows highly customizable creation of
+color blindness friendly, publication-quality figures. dittoSeq accepts both
+SingleCellExperiment (SCE) and Seurat objects, as well as the import and
+usage, via conversion to an SCE, of SummarizedExperiment or DGEList bulk data.
+Visualizations include dimensionality reduction plots, heatmaps, scatterplots,
+percent composition or expression across groups, and more. Customizations
+range from size and title adjustments to automatic generation of annotations
+for heatmaps, overlay of trajectory analysis onto any dimensionality reduciton
+plot, hidden data overlay upon cursor hovering via ggplotly conversion, and
+many more. All with simple, discrete inputs. Color blindness friendliness is
+powered by legend adjustments (enlarged keys), and by allowing the use of
+shapes or letter-overlay in addition to the carefully selected
+code{dittoColors()}.")
+ (license license:expat)))
+
(define-public r-edaseq
(package
(name "r-edaseq")