diff options
author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-06-16 18:35:02 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2022-11-24 15:09:13 +0100 |
commit | 6c7f0849c1e01bd9a3252643a7dd4442c4d9fc14 (patch) | |
tree | 2c21fb3a368b1acba5cf9fd967054fd07476528f /gnu/packages/bioconductor.scm | |
parent | c706a0a2afd6ea2fa1905758970797cddeb150a3 (diff) |
gnu: Add r-alphabeta.
* gnu/packages/bioconductor.scm (r-alphabeta): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r-- | gnu/packages/bioconductor.scm | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4ac69d1a89..92a3bc5a15 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2301,6 +2301,45 @@ paired or unpaired study designs.") ;; package's LICENSE is specified as GPL-3. (license (list license:agpl3+ license:gpl2+ license:gpl3)))) +(define-public r-alphabeta + (package + (name "r-alphabeta") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AlphaBeta" version)) + (sha256 + (base32 + "1ikdrigma02gnl6ggrc89bjsiqmd7knpb9kw7nqyrdnv3qjd9iag")))) + (properties `((upstream-name . "AlphaBeta"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocparallel + r-data-table + r-dplyr + r-expm + r-ggplot2 + r-gtools + r-igraph + r-optimx + r-plotly + r-stringr)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AlphaBeta") + (synopsis "Estimate epimutation rates and spectra from DNA methylations in plants") + (description + "The package @code{AlphaBeta} is a computational method for estimating +epimutation rates and spectra from high-throughput DNA methylation data in +plants. The method has been specifically designed to: + +@itemize +@item analyze @emph{germline} epimutations in the context of + multi-generational mutation accumulation lines; +@item analyze @emph{somatic} epimutations in the context of plant development + and aging. +@end itemize") + (license license:gpl3))) + (define-public r-alpine (package (name "r-alpine") |