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authorRicardo Wurmus <rekado@elephly.net>2022-08-25 11:31:13 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-08-25 11:55:12 +0200
commitadd211b277cd67fcd0607f877dfa7ffc972a020b (patch)
tree9350ba4459a0d276be087ea11693767c58b4435d /gnu/packages/bioconductor.scm
parentdfa373069df55bb4eb6e13792336db8e0fb85d1d (diff)
gnu: Add r-scry.
* gnu/packages/bioconductor.scm (r-scry): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d27419428f..facfb75abf 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5751,6 +5751,38 @@ a scRNA-seq experiment onto the cell-types or individual cells identified in a
different experiment.")
(license license:gpl3)))
+(define-public r-scry
+ (package
+ (name "r-scry")
+ (version "1.8.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scry" version))
+ (sha256
+ (base32
+ "16mj21r91jy8ircdz8rfrdli9gjy0hrx90kf6ghs305d3d4dl193"))))
+ (properties `((upstream-name . "scry")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocsingular
+ r-delayedarray
+ r-glmpca
+ r-hdf5array
+ r-matrix
+ r-singlecellexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/scry.html")
+ (synopsis "Small-count analysis methods for high-dimensional data")
+ (description
+ "Many modern biological datasets consist of small counts that are not
+well fit by standard linear-Gaussian methods such as principal component
+analysis. This package provides implementations of count-based feature
+selection and dimension reduction algorithms. These methods can be used to
+facilitate unsupervised analysis of any high-dimensional data such as
+single-cell RNA-seq.")
+ (license license:artistic2.0)))
+
(define-public r-seqlogo
(package
(name "r-seqlogo")