diff options
| author | Roel Janssen <roel@gnu.org> | 2021-05-26 09:13:54 +0200 |
|---|---|---|
| committer | Roel Janssen <roel@gnu.org> | 2021-05-26 09:13:54 +0200 |
| commit | b84ead8c045f7921131dc66ab85ee1db3113607a (patch) | |
| tree | 9fe2c3014aae1101b01ae663f58aea40ec44a1d4 /gnu/packages/bioconductor.scm | |
| parent | 189311660bab43952c4bd266317d892dc5fae5ce (diff) | |
gnu: Add r-aneufinder.
* gnu/packages/bioconductor.scm (r-aneufinder): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b4ea90592b..02bfe21f7d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -950,6 +950,48 @@ All datasets are restricted to protein coding genes.") (description "This package contains data used by @code{AneuFinder}.") (license license:artistic2.0))) +(define-public r-aneufinder + (package + (name "r-aneufinder") + (version "1.18.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AneuFinder" version)) + (sha256 + (base32 + "1j2n6i3ja63i98y1mbb8ndn6cn2a0pw97zz6al4myycnv55w49j3")))) + (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) + (propagated-inputs + `(("r-genomicranges" ,r-genomicranges) + ("r-aneufinderdata" ,r-aneufinderdata) + ("r-ecp" ,r-ecp) + ("r-foreach" ,r-foreach) + ("r-doparallel" ,r-doparallel) + ("r-biocgenerics" ,r-biocgenerics) + ("r-s4vectors" ,r-s4vectors) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-iranges" ,r-iranges) + ("r-rsamtools" ,r-rsamtools) + ("r-bamsignals" ,r-bamsignals) + ("r-dnacopy" ,r-dnacopy) + ("r-biostrings" ,r-biostrings) + ("r-genomicalignments" ,r-genomicalignments) + ("r-ggplot2" ,r-ggplot2) + ("r-reshape2" ,r-reshape2) + ("r-ggdendro" ,r-ggdendro) + ("r-ggrepel" ,r-ggrepel) + ("r-reordercluster" ,r-reordercluster) + ("r-mclust" ,r-mclust) + ("r-cowplot" ,r-cowplot))) + (home-page "https://bioconductor.org/packages/AneuFinder/") + (synopsis "Copy number variation analysis in single-cell-sequencing data") + (description "This package implements functions for copy number variant +calling, plotting, export and analysis from whole-genome single cell +sequencing data.") + (license license:artistic2.0))) + (define-public r-arrmdata (package (name "r-arrmdata") |