summaryrefslogtreecommitdiff
path: root/gnu/packages/bioconductor.scm
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2021-09-07 14:38:34 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-09-07 14:47:56 +0200
commitd5f792ac10a3843a00112238016a81186f2b8cff (patch)
tree098258b766fd4490bb9dc724c2c5ac0cd982f315 /gnu/packages/bioconductor.scm
parent35526b62a89ec8d5b1bbf9cb0fc48ead459126ec (diff)
gnu: Add r-bionetstat.
* gnu/packages/bioconductor.scm (r-bionetstat): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm42
1 files changed, 42 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3ec1273cd4..d1e251f89b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14366,6 +14366,48 @@ calculated and an integer linear programming algorithm identifies the maximum
scoring subnetwork.")
(license license:gpl2+)))
+(define-public r-bionetstat
+ (package
+ (name "r-bionetstat")
+ (version "1.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BioNetStat" version))
+ (sha256
+ (base32
+ "16xlfng9m8xvm831c2x6zmjc0gavlfiy9pnza55hdv86888fcnbg"))))
+ (properties `((upstream-name . "BioNetStat")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocparallel" ,r-biocparallel)
+ ("r-dt" ,r-dt)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-hmisc" ,r-hmisc)
+ ("r-igraph" ,r-igraph)
+ ("r-knitr" ,r-knitr)
+ ("r-markdown" ,r-markdown)
+ ("r-pathview" ,r-pathview)
+ ("r-pheatmap" ,r-pheatmap)
+ ("r-plyr" ,r-plyr)
+ ("r-psych" ,r-psych)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rjsonio" ,r-rjsonio)
+ ("r-rmarkdown" ,r-rmarkdown)
+ ("r-shiny" ,r-shiny)
+ ("r-shinybs" ,r-shinybs)
+ ("r-whisker" ,r-whisker)
+ ("r-yaml" ,r-yaml)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/jardimViniciusC/BioNetStat")
+ (synopsis "Biological network analysis")
+ (description
+ "This package provides a package to perform differential network
+analysis, differential node analysis (differential coexpression analysis),
+network and metabolic pathways view.")
+ (license license:gpl3+)))
+
(define-public r-tximeta
(package
(name "r-tximeta")