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authorRicardo Wurmus <rekado@elephly.net>2018-11-08 08:34:01 +0100
committerRicardo Wurmus <rekado@elephly.net>2018-11-08 08:53:53 +0100
commit3398dfb764f309ad4d0cace5c80ae4c6b69b12f6 (patch)
treee0f1b3ac472239524deed59d6c9bcc5fc81bb451 /gnu/packages/bioinformatics.scm
parente0f1aa2d2b09d9baa69cd6b69735671f694b1f8b (diff)
gnu: ncbi-vdb: Fetch sources from git.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[source]: Fetch from git. [arguments]: Add phase to make checkout writable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm21
1 files changed, 11 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bbdecbff43..6ef4adb305 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5303,22 +5303,23 @@ simultaneously.")
(package
(name "ncbi-vdb")
(version "2.8.2")
- (source
- (origin
- (method url-fetch)
- (uri
- (string-append "https://github.com/ncbi/ncbi-vdb/archive/"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "1acn4bv81mfl137qnbn9995mjjhwd36pm0b7qli1iw5skrxa9j8m"))))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ncbi/ncbi-vdb.git")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1ssy5wlqdm86pmbv9mfdjx518lbsk32wfv2qgr7m1z77kaicw7zq"))))
(build-system gnu-build-system)
(arguments
`(#:parallel-build? #f ; not supported
#:tests? #f ; no "check" target
#:phases
(modify-phases %standard-phases
+ (add-after 'unpack 'make-files-writable
+ (lambda _ (for-each make-file-writable (find-files "." ".*")) #t))
(add-before 'configure 'set-perl-search-path
(lambda _
;; Work around "dotless @INC" build failure.