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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2023-12-27 11:02:36 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-02 10:19:35 +0100 |
| commit | 404c4a5abac34c2a645e1af9a60c8899bd790ed9 (patch) | |
| tree | a3899d295cd2124a84290dad1e1d7b8310ce0744 /gnu/packages/bioinformatics.scm | |
| parent | c8e2b85ed1cbb3e17701c838db797ab718d18be0 (diff) | |
gnu: Add r-projectils.
* gnu/packages/bioinformatics.scm (r-projectils): New variable.
Change-Id: Ia975cfcb9c79e59b029c6839dc87b5dcb89bf72a
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 34039b2eb5..56219c55a5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10349,6 +10349,51 @@ data. This package includes panel editing or renaming for FCS files, bead-based normalization and debarcoding.") (license license:gpl3)))) +(define-public r-projectils + (let ((commit "cc73b97471b4b6eea11ce779b5c4a7dc5c3e1709") + (revision "1")) + (package + (name "r-projectils") + (version (git-version "3.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/carmonalab/ProjecTILs") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0dpzvbhhb9andnj7angpj32cgkwd6rs6qgpl6i21pqzcn6vqqhqw")))) + (properties `((upstream-name . "ProjecTILs"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocneighbors + r-biocparallel + r-dplyr + r-ggplot2 + r-matrix + r-patchwork + r-pheatmap + r-pracma + r-purrr + r-rcolorbrewer + r-reshape2 + r-scales + r-scgate + r-seurat + r-seuratobject + r-stacas + r-ucell + r-umap + r-uwot)) + (home-page "https://github.com/carmonalab/ProjecTILs") + (synopsis "Reference-based analysis of scRNA-seq data") + (description + "This package implements methods to project single-cell RNA-seq data +onto a reference atlas, enabling interpretation of unknown cell transcriptomic +states in the the context of known, reference states.") + (license license:gpl3)))) + (define-public r-presto (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad") (revision "0")) |