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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-04-23 16:42:50 +0200
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-05-04 10:28:26 +0200
commit41dd7126570d9d8699d228aa9e6c6d092be816e0 (patch)
treee47e95d0a5aecdc30483c44fdcd39cb90352f5bd /gnu/packages/bioinformatics.scm
parent0a75450c14c7e9639099ec470b037795bb6f8f50 (diff)
gnu: samtools: Install libbam.a library.
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Add phase "install-library" to install the libbam.a library.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm10
1 files changed, 7 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9db8fa4d39..6fc2bee469 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1086,9 +1086,13 @@ distribution, coverage uniformity, strand specificity, etc.")
;; them.
(("(test_usage_subcommand\\(.*\\);)" cmd)
(string-append "unless ($subcommand eq 'stats') {" cmd "};")))))
- (alist-delete
- 'configure
- %standard-phases))))
+ (alist-cons-after
+ 'install 'install-library
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((lib (string-append (assoc-ref outputs "out") "/lib")))
+ (mkdir-p lib)
+ (copy-file "libbam.a" (string-append lib "/libbam.a"))))
+ (alist-delete 'configure %standard-phases)))))
(native-inputs `(("pkg-config" ,pkg-config)))
(inputs `(("ncurses" ,ncurses)
("perl" ,perl)