diff options
| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-02-09 09:12:34 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-02-09 11:05:29 +0100 |
| commit | 4d35a5e2b6486e24bb74665ab6a65ca0cfd0b475 (patch) | |
| tree | 702e5a4e50a6d40f0b04682d582338c636d791f7 /gnu/packages/bioinformatics.scm | |
| parent | 43ee3e1da226ff23849cc33f9d0903c593897c9a (diff) | |
gnu: Add python-scrublet.
* gnu/packages/bioinformatics.scm (python-scrublet): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 055c8ca47b..fdf52c5851 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3459,6 +3459,35 @@ and record oriented data modeling and the Semantic Web.") resources for bioinformatics.") (license license:bsd-3))) +(define-public python-scrublet + (package + (name "python-scrublet") + (version "0.2.3") + (source (origin + (method url-fetch) + (uri (pypi-uri "scrublet" version)) + (sha256 + (base32 + "0fk5pwk12yz9wpvwkl6j2l2g28f3x35b9r9n5bw6f0i9f0qgd191")))) + (build-system pyproject-build-system) + (arguments '(#:tests? #false)) ;there are none + (propagated-inputs + (list python-annoy + python-cython + python-matplotlib + python-numba + python-numpy + python-pandas + python-scikit-image + python-scikit-learn + python-scipy + python-umap-learn)) + (home-page "https://github.com/swolock/scrublet") + (synopsis "Tool to indentify and remove doublets in single-cell data") + (description "This package provides a tool for identifying and removing +doublets in single-cell RNA-seq data.") + (license license:expat))) + (define-public cwltool (package (name "cwltool") |