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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2019-07-15 12:13:42 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-07-15 12:18:01 +0200
commit886986b744f9bbf0d27c365a0e466a7f21d004f8 (patch)
treed2d4dc4bae36ab33917b5705a385ee240efa7527 /gnu/packages/bioinformatics.scm
parentd71d85cd17ea86d902f6d8109e43134138640a90 (diff)
gnu: Add python-ont-fast5-api.
* gnu/packages/bioinformatics.scm (python-ont-fast5-api): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm29
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9535678ccf..d72fde00b4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14754,6 +14754,35 @@ vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots
are generated using @code{ggplot2}.")
(license license:expat)))
+(define-public python-ont-fast5-api
+ (package
+ (name "python-ont-fast5-api")
+ (version "1.4.4")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/nanoporetech/ont_fast5_api.git")
+ (commit (string-append "release_" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "03cbq4zbbwhll8ml2m9k8sa31mirsvcbjkrq1yna0kkzz9fad5fm"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-numpy" ,python-numpy)
+ ("python-six" ,python-six)
+ ("python-h5py" ,python-h5py)
+ ("python-progressbar33" ,python-progressbar33)))
+ (home-page "https://github.com/nanoporetech/ont_fast5_api")
+ (synopsis "Interface to HDF5 files of the Oxford Nanopore fast5 file format")
+ (description
+ "This package provides a concrete implementation of the fast5 file schema
+using the generic @code{h5py} library, plain-named methods to interact with
+and reflect the fast5 file schema, and tools to convert between
+@code{multi_read} and @code{single_read} formats.")
+ (license license:mpl2.0)))
+
(define-public tbsp
(let ((commit "ec8fff4410cfb13a677dbbb95cbbc60217e64907")
(revision "1"))