diff options
| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-09-05 16:00:01 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-09-10 16:50:26 +0200 |
| commit | a9d496b353e71f22e5ace5bff9319fc74dfb6643 (patch) | |
| tree | d2594d6f5d850a59bd2081a758de2dfe69381feb /gnu/packages/bioinformatics.scm | |
| parent | a6a7156aa970b08821a00599d7941740d8a22b70 (diff) | |
gnu: Add python-intervaltree.
* gnu/packages/bioinformatics.scm (python-intervaltree): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6580cac531..dd8ed725d8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13504,3 +13504,31 @@ reference transcripts provided in a annotation file (also in GTF/GFF3 format). (list license:expat ;license for gffcompare license:artistic2.0))))) ;license for gclib + +(define-public python-intervaltree + (package + (name "python-intervaltree") + (version "2.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "intervaltree" version)) + (sha256 + (base32 + "02w191m9zxkcjqr1kv2slxvhymwhj3jnsyy3a28b837pi15q19dc")))) + (build-system python-build-system) + ;; FIXME: error when collecting tests + (arguments '(#:tests? #f)) + (propagated-inputs + `(("python-sortedcontainers" ,python-sortedcontainers))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/chaimleib/intervaltree") + (synopsis "Editable interval tree data structure") + (description + "This package provides a mutable, self-balancing interval tree +implementation for Python. Queries may be by point, by range overlap, or by +range envelopment. This library was designed to allow tagging text and time +intervals, where the intervals include the lower bound but not the upper +bound.") + (license license:asl2.0))) |