diff options
| author | Afkhami, Navid <Navid.Afkhami@mdc-berlin.de> | 2024-06-19 15:02:46 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-07-01 15:43:56 +0200 |
| commit | b77491909bb5b8bd7a4f4c855db7f29218f3b8b7 (patch) | |
| tree | 57efc81299b96f5cbed2609e2c978b8a969648c1 /gnu/packages/bioinformatics.scm | |
| parent | 6522f93ed098fa13f51f6d017035607e26237d31 (diff) | |
gnu: Add r-anpan.
* gnu/packages/bioinformatics.scm (r-anpan): New variable.
Change-Id: Ia01ba3be7424306674b9c9b2904f1f0cfa66d818
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a41c60738a..58c0f07e87 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -752,6 +752,54 @@ directly access various slots (e.g. X, obs, var), or convert the data into @code{SingleCellExperiment} and Seurat objects.") (license license:expat)))) +(define-public r-anpan + (let ((commit "286b88dcf5e9e963a595482139aade154ee1dc86") + (revision "1")) + (package + (name "r-anpan") + (version (git-version "0.3.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/biobakery/anpan") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "10nw5v69gn4pxb4g5gd8nh9r1ywd6yczapl3dpdfms0434wcmkxm")))) + (properties `((upstream-name . "anpan"))) + (build-system r-build-system) + (propagated-inputs (list r-ape + r-cmdstanr + r-data-table + r-dplyr + r-fastglm + r-furrr + r-future + r-ggdendro + r-ggnewscale + r-ggplot2 + r-loo + r-mass + r-patchwork + r-phylogram + r-posterior + r-progressr + r-purrr + r-r-utils + r-stringr + r-tibble + r-tidyselect)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/biobakery/anpan") + (synopsis "Quantifying microbial strain-host associations") + (description + "The goal of anpan is to consolidate statistical methods for strain +analysis. This includes automated filtering of metagenomic functional +profiles, testing genetic elements for association with outcomes, phylogenetic +association testing, and pathway-level random effects models.") + (license license:expat)))) + (define-public r-bedtorch (let ((commit "f5ff4f83b94f59eac660333c64e4b2f296b35cea") (revision "1")) |