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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-01-23 23:47:31 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-23 23:47:31 +0100 |
| commit | c376298c7c4d4cfcd44f4b0da71260e819959cbc (patch) | |
| tree | 8828b1ca2ce45b87409ffb21494d95103259b00f /gnu/packages/bioinformatics.scm | |
| parent | 825b3ca76367dc9b084eaf535fd7aafc95b3c8fa (diff) | |
gnu: Add flash.
* gnu/packages/bioinformatics.scm (flash): New variable.
Change-Id: Id657ba7850031ad24b4333b6bc79401511e00a85
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a1cc041caa..2c2a69052d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6343,6 +6343,43 @@ sequences to the genome---manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks.") (license license:agpl3+))) +(define-public flash + (package + (name "flash") + (version "1.2.11") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/flashpage/FLASH-" + version ".tar.gz")) + (sha256 + (base32 + "1b1ns9ghbcxy92xwa2a53ikqacvnyhvca0zfv0s7986xzvvscp38")))) + (build-system gnu-build-system) + (arguments + (list + #:make-flags #~(list (string-append "CC=" #$(cc-for-target))) + #:tests? #f ;no tests + #:phases + #~(modify-phases %standard-phases + ;; No configure script + (delete 'configure) + ;; No install target + (replace 'install + (lambda _ + (install-file "flash" + (string-append #$output "/bin"))))))) + (inputs (list zlib)) + (home-page "http://ccb.jhu.edu/software/FLASH/") + (synopsis "Merge paired-end nucleotide reads from NGS experiments") + (description "FLASH (Fast Length Adjustment of SHort reads) is a tool to +merge paired-end reads from next-generation sequencing experiments. FLASH is +designed to merge pairs of reads when the original DNA fragments are shorter +than twice the length of reads. The resulting longer reads can significantly +improve genome assemblies. They can also improve transcriptome assembly when +FLASH is used to merge RNA-seq data.") + (license license:gpl3+))) + (define-public flexbar (package (name "flexbar") |