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authorLudovic Courtès <ludo@gnu.org>2021-07-16 17:20:09 +0200
committerLudovic Courtès <ludo@gnu.org>2021-07-24 16:23:24 +0200
commitd468a03a00738bb0742148e056f7a557aae08f2f (patch)
tree6f2012c47d4aad57565fb31a1da8b180c699b125 /gnu/packages/bioinformatics.scm
parent828cfdc47e567d75b4629a7af7afed3a20adcf5a (diff)
gnu: Use 'search-input-directory' and 'search-input-file' where appropriate.
This changes some of the remaining uses of this idiom: (string-append (assoc-ref inputs "LABEL") "FILE") to one of: (search-input-file inputs "FILE") (search-input-directory inputs "FILE") * gnu/packages/axoloti.scm (axoloti-patcher): Use 'search-input-directory'. (axoloti-patcher-next): Likewise. * gnu/packages/bioinformatics.scm (java-picard): Likewise. * gnu/packages/bootloaders.scm (grub-hybrid): Likewise. (u-boot-puma-rk3399): Likewise. (u-boot-rock64-rk3328): Likewise. (u-boot-firefly-rk3399): Likewise. (u-boot-rockpro64-rk3399): Likewise. (u-boot-pinebook-pro-rk3399): Likewise. * gnu/packages/cran.scm (r-shiny): Likewise. (r-shinytree): Likewise. * gnu/packages/education.scm (anki): Likewise. * gnu/packages/emacs-xyz.scm (emacs-flycheck-grammalecte): Likewise. (emacs-rime): Likewise. * gnu/packages/emulators.scm (dolphin-emu): Likewise. * gnu/packages/games.scm (bsd-games): Likewise. (seahorse-adventures): Likewise. (einstein): Likewise. * gnu/packages/gimp.scm (gimp-fourier): Likewise. * gnu/packages/gnome.scm (gspell): Likewise. * gnu/packages/guile-xyz.scm (guile-libyaml): Likewise. * gnu/packages/java.scm (icedtea-7): Likewise. * gnu/packages/language.scm (nimf): Likewise. * gnu/packages/lxde.scm (spacefm): Likewise. * gnu/packages/mail.scm (claws-mail): Likewise. * gnu/packages/netpbm.scm (netpbm): Likewise. * gnu/packages/networking.scm (blueman): Likewise. * gnu/packages/scheme.scm (scm): Likewise. * gnu/packages/security-token.scm (python-fido2): Likewise. * gnu/packages/syndication.scm (rtv): Likewise. * gnu/packages/tls.scm (acme-client): Likewise. * gnu/packages/web.scm (netsurf): Likewise. * gnu/packages/wine.scm (wine-staging): Likewise. * gnu/packages/wxwidgets.scm (wxwidgets): Likewise.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm5
1 files changed, 2 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1719cf86ae..002b417b54 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4222,9 +4222,8 @@ manipulating HTS data.")
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "build.xml"
(("\\$\\{htsjdk\\}/lib")
- (string-append (assoc-ref inputs "java-htsjdk")
- "/share/java/htsjdk/")))
- #t))
+ (search-input-directory inputs
+ "share/java/htsjdk")))))
(add-after 'unpack 'make-test-target-independent
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "build.xml"