diff options
| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-01-20 09:57:59 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-01-20 11:02:37 +0100 |
| commit | ddfe68ebbe502508381af844031a44dc0a022c60 (patch) | |
| tree | 111bf3d2e1cbbe9ee5bce73f0014de7d2f616de4 /gnu/packages/bioinformatics.scm | |
| parent | 072f605c125f98bf69cf25ec5a6caf791c72920b (diff) | |
gnu: Add r-doubletcollection.
* gnu/packages/bioinformatics.scm (r-doubletcollection): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 43 |
1 files changed, 42 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d9c39fbb34..bac094b1a5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -23,7 +23,7 @@ ;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de> ;;; Copyright © 2021, 2022, 2023 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2021 Felix Gruber <felgru@posteo.net> -;;; Copyright © 2022 Navid Afkhami <navid.afkhami@mdc-berlin.de> +;;; Copyright © 2022, 2023 Navid Afkhami <navid.afkhami@mdc-berlin.de> ;;; Copyright © 2022 Antero Mejr <antero@mailbox.org> ;;; ;;; This file is part of GNU Guix. @@ -7986,6 +7986,47 @@ tasks.") Pore-C concatemers.") (license license:gpl3)))) +(define-public r-doubletcollection + (let ((commit "c0d62f1853942ee6a087eaf7b000d9e4261e2dfd") + (revision "1")) + (package + (name "r-doubletcollection") + (version (git-version "1.1.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/xnnba1984/DoubletCollection") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "02cvibyc2nwc4037ramm5cskjwyrb9ib9hkrfhmvhbslkn5ixz1v")))) + (properties `((upstream-name . "DoubletCollection"))) + (build-system r-build-system) + (propagated-inputs (list r-biocgenerics + r-doubletfinder + r-gam + r-ggplot2 + r-ggthemes + r-mast + r-mclust + r-prroc + r-reticulate + r-scales + r-scdblfinder + r-scds + r-seurat + r-singlecellexperiment + r-slingshot + r-summarizedexperiment)) + (home-page "https://github.com/xnnba1984/DoubletCollection") + (synopsis "Tool for finding doublets in scRNA-seq data") + (description + "This is an R package that integrates the installation of +doublet-detection methods. In addition, this tool is used for execution and +benchmark of those eight mentioned methods.") + (license license:gpl3+)))) + (define-public r-pando (package (name "r-pando") |