diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2023-02-10 15:48:21 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-02-10 19:36:36 +0100 |
| commit | fea66096a291f5eaf762da430e339feacac391b4 (patch) | |
| tree | 40f77c3c19f786b2c0076186acab6d9820aa80d8 /gnu/packages/bioinformatics.scm | |
| parent | cf981657a1d4c6ba64bf7e9a015d2be239ca85c2 (diff) | |
gnu: Add python-doubletdetection.
* gnu/packages/bioinformatics.scm (python-doubletdetection): New variable.
Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c70dcdf93b..ad8754f106 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1178,6 +1178,54 @@ It is the demultiplexing module of Pegasus, which is used by Cumulus in the demultiplexing step.") (license license:bsd-3))) +(define-public python-doubletdetection + (package + (name "python-doubletdetection") + (version "4.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "doubletdetection" version)) + (sha256 + (base32 + "0v0a19014h4p6x8pyz1s78xn3q5w5166cysvg574z6vw79a3s9vp")))) + (build-system pyproject-build-system) + (arguments + (list + #:tests? #false ;there are none + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'use-poetry-core + (lambda _ + ;; Patch to use the core poetry API. + (substitute* "pyproject.toml" + (("poetry.masonry.api") + "poetry.core.masonry.api"))))))) + (propagated-inputs + (list python-anndata + python-ipywidgets + python-leidenalg + python-vtraag-louvain + python-matplotlib + python-numpy + python-pandas + python-phenograph + python-scanpy + python-scipy + python-tqdm)) + (native-inputs + (list python-black + python-flake8 + python-poetry-core + python-pytest + python-pre-commit)) + (home-page "https://github.com/JonathanShor/DoubletDetection") + (synopsis + "This is a package to detect doublets in single-cell RNA-seq count matrices") + (description + "This package provides a method to detect and enable removal of doublets +from single-cell RNA-sequencing.") + (license license:expat))) + (define-public python-hclust2 (package (name "python-hclust2") |