summaryrefslogtreecommitdiff
path: root/gnu/packages/cran.scm
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2021-03-15 22:05:43 +0100
committerRicardo Wurmus <rekado@elephly.net>2021-03-15 22:06:57 +0100
commit29e992c03001ce0c6b4a5ed33d9db7d9593cc23b (patch)
tree58d5e343f9357b632eb4b41ae7b755e5e0b0fbad /gnu/packages/cran.scm
parentfcb122b4ed3f8e7fde815a843338921e5d8302b0 (diff)
gnu: r-seurat: Fix build.
This is a follow-up to commit e4d4046999304a3693da80cf0fdfe5fd5753b2b7 * gnu/packages/cran.scm (r-seurat)[arguments]: Patch NAMESPACE file.
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r--gnu/packages/cran.scm12
1 files changed, 12 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3afe67f7cf..5617383cbc 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -26491,6 +26491,18 @@ other R users.")
"1mp3py00bmzj4541d8ry5sfzkpfzvnl9dpa8n4qhakd13dl30xdn"))))
(properties `((upstream-name . "Seurat")))
(build-system r-build-system)
+ ;; This is needed because r-spatstat has been split up and there has
+ ;; been no new release of Seurat since then.
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-spatstat-import
+ (lambda _
+ (substitute* "NAMESPACE"
+ (("importFrom\\(spatstat,markvario\\)")
+ "importFrom(spatstat.core,markvario)")
+ (("importFrom\\(spatstat,ppp\\)")
+ "importFrom(spatstat.geom,ppp)")))))))
(propagated-inputs
`(("r-cluster" ,r-cluster)
("r-cowplot" ,r-cowplot)