Merge branch 'master' into emacs-team

6 files changed, 190 insertions, 362 deletions

diff --git a/gnu/packages/patches/apr-fix-atomics.patch b/gnu/packages/patches/apr-fix-atomics.patch
new file mode 100644
index 0000000000..94cce9b5f1
--- /dev/null
+++ b/gnu/packages/patches/apr-fix-atomics.patch
@@ -0,0 +1,49 @@
+This patch is taken from Debian, using Debian version 1.7.0-8.
+A new patch will be needed when apr is updated.
+
+# quick and dirty fix for FTBFS on mipsel
+# There should be a proper configure check, see 
+# https://bz.apache.org/bugzilla/show_bug.cgi?id=63566
+Index: apr-1.7.0/include/arch/unix/apr_arch_atomic.h
+===================================================================
+--- apr-1.7.0.orig/include/arch/unix/apr_arch_atomic.h
++++ apr-1.7.0/include/arch/unix/apr_arch_atomic.h
+@@ -26,6 +26,9 @@
+ /* noop */
+ #elif HAVE_ATOMIC_BUILTINS
+ #   define USE_ATOMICS_BUILTINS
++#   if (__INTPTR_WIDTH__ == 32) && ( defined(__MIPSEL__) || defined(__powerpc__) ) || defined(__m68k__) || defined(__sh__)
++#       define NEED_ATOMICS_GENERIC64
++#   endif
+ #elif defined(SOLARIS2) && SOLARIS2 >= 10
+ #   define USE_ATOMICS_SOLARIS
+ #   define NEED_ATOMICS_GENERIC64
+Index: apr-1.7.0/atomic/unix/builtins64.c
+===================================================================
+--- apr-1.7.0.orig/atomic/unix/builtins64.c
++++ apr-1.7.0/atomic/unix/builtins64.c
+@@ -16,7 +16,7 @@
+ 
+ #include "apr_arch_atomic.h"
+ 
+-#ifdef USE_ATOMICS_BUILTINS
++#if defined(USE_ATOMICS_BUILTINS) && ! defined(NEED_ATOMICS_GENERIC64)
+ 
+ APR_DECLARE(apr_uint64_t) apr_atomic_read64(volatile apr_uint64_t *mem)
+ {
+Index: apr-1.7.0/atomic/unix/builtins.c
+===================================================================
+--- apr-1.7.0.orig/atomic/unix/builtins.c
++++ apr-1.7.0/atomic/unix/builtins.c
+@@ -20,7 +20,11 @@
+ 
+ APR_DECLARE(apr_status_t) apr_atomic_init(apr_pool_t *p)
+ {
++#if defined (NEED_ATOMICS_GENERIC64)
++    return apr__atomic_generic64_init(p);
++#else
+     return APR_SUCCESS;
++#endif
+ }
+ 
+ APR_DECLARE(apr_uint32_t) apr_atomic_read32(volatile apr_uint32_t *mem)
diff --git a/gnu/packages/patches/ibus-table-paths.patch b/gnu/packages/patches/ibus-table-paths.patch
new file mode 100644
index 0000000000..bc0c5e78e1
--- /dev/null
+++ b/gnu/packages/patches/ibus-table-paths.patch
@@ -0,0 +1,38 @@
+diff --git a/engine/ibus-engine-table.in b/engine/ibus-engine-table.in
+index e79d62a6cad4..675007204abd 100644
+--- a/engine/ibus-engine-table.in
++++ b/engine/ibus-engine-table.in
+@@ -24,8 +24,6 @@ prefix=@prefix@
+ exec_prefix=@prefix@
+ datarootdir=@datarootdir@
+ datadir=@datadir@
+-export IBUS_TABLE_LOCATION=@datarootdir@/ibus-table
+-export IBUS_TABLE_LIB_LOCATION=@libexecdir@
+ 
+ # Set this variable to something > 0 to get more debug output.
+ # (Debug output may show up in the log file and/or in the lookup table):
+diff --git a/engine/ibus-table-createdb.in b/engine/ibus-table-createdb.in
+index 91eb28b7cbe5..187dddf2c952 100644
+--- a/engine/ibus-table-createdb.in
++++ b/engine/ibus-table-createdb.in
+@@ -24,6 +24,4 @@ exec_prefix=@exec_prefix@
+ bindir=@bindir@
+ datarootdir=@datarootdir@
+ datadir=@datadir@
+-export IBUS_TABLE_DATA_DIR=@datarootdir@
+-export IBUS_TABLE_BIN_PATH=@bindir@
+ exec @PYTHON@ @datarootdir@/ibus-table/engine/tabcreatedb.py $@
+diff --git a/setup/ibus-setup-table.in b/setup/ibus-setup-table.in
+index 7f7405c37296..ae6f96921c56 100644
+--- a/setup/ibus-setup-table.in
++++ b/setup/ibus-setup-table.in
+@@ -22,9 +22,6 @@
+ prefix=@prefix@
+ exec_prefix=@exec_prefix@
+ datarootdir=@datarootdir@
+-export IBUS_PREFIX=@prefix@
+-export IBUS_DATAROOTDIR=@datarootdir@
+-export IBUS_LOCALEDIR=@localedir@
+ cd @prefix@/share/ibus-table/setup/
+ exec @PYTHON@ main.py $@
+ 
diff --git a/gnu/packages/patches/john-the-ripper-jumbo-with-gcc-11.patch b/gnu/packages/patches/john-the-ripper-jumbo-with-gcc-11.patch
new file mode 100644
index 0000000000..67149f15a9
--- /dev/null
+++ b/gnu/packages/patches/john-the-ripper-jumbo-with-gcc-11.patch
@@ -0,0 +1,50 @@
+From 154ee1156d62dd207aff0052b04c61796a1fde3b Mon Sep 17 00:00:00 2001
+From: Ferry Huberts <ferry.huberts@pelagic.nl>
+Date: Tue, 9 Mar 2021 22:04:46 +0100
+Subject: [PATCH] Fix alignment compile errors on GCC 11
+
+Signed-off-by: Ferry Huberts <ferry.huberts@pelagic.nl>
+---
+ src/blake2.h | 8 ++++----
+ 1 file changed, 4 insertions(+), 4 deletions(-)
+
+diff --git a/src/blake2.h b/src/blake2.h
+index b05208117e..b4398f9e13 100644
+--- a/src/blake2.h
++++ b/src/blake2.h
+@@ -57,7 +57,7 @@ extern "C" {
+     uint8_t  personal[BLAKE2S_PERSONALBYTES];  // 32
+   } blake2s_param;
+
+-  JTR_ALIGN( 64 ) typedef struct __blake2s_state
++  typedef struct JTR_ALIGN( 64 ) __blake2s_state
+   {
+     uint32_t h[8];
+     uint32_t t[2];
+@@ -82,7 +82,7 @@ extern "C" {
+     uint8_t  personal[BLAKE2B_PERSONALBYTES];  // 64
+   } blake2b_param;
+
+-  JTR_ALIGN( 64 ) typedef struct __blake2b_state
++  typedef struct JTR_ALIGN( 64 ) __blake2b_state
+   {
+     uint64_t h[8];
+     uint64_t t[2];
+@@ -94,7 +94,7 @@ extern "C" {
+ #if defined(JOHN_NO_SIMD) || (!defined(__SSE2__) && !defined(__SSE4_1__) && !defined(__XOP__))
+   typedef struct __blake2sp_state
+ #else
+-  JTR_ALIGN( 64 ) typedef struct __blake2sp_state
++  typedef struct JTR_ALIGN( 64 ) __blake2sp_state
+ #endif
+   {
+     blake2s_state S[8][1];
+@@ -106,7 +106,7 @@ extern "C" {
+ #if defined(JOHN_NO_SIMD) || (!defined(__SSE2__) && !defined(__SSE4_1__) && !defined(__XOP__))
+   typedef struct __blake2bp_state
+ #else
+-  JTR_ALIGN( 64 ) typedef struct __blake2bp_state
++  typedef struct JTR_ALIGN( 64 ) __blake2bp_state
+ #endif
+   {
+     blake2b_state S[4][1];
diff --git a/gnu/packages/patches/linux-libre-wireguard-postup-privkey.patch b/gnu/packages/patches/linux-libre-wireguard-postup-privkey.patch
deleted file mode 100644
index a6050499e1..0000000000
--- a/gnu/packages/patches/linux-libre-wireguard-postup-privkey.patch
+++ /dev/null
@@ -1,119 +0,0 @@
-From 3ac1bf099766f1e9735883d5127148054cd5b30a Mon Sep 17 00:00:00 2001
-From: "Jason A. Donenfeld" <Jason@zx2c4.com>
-Date: Thu, 18 May 2023 03:08:44 +0200
-Subject: wireguard: netlink: send staged packets when setting initial private
- key
-
-Packets bound for peers can queue up prior to the device private key
-being set. For example, if persistent keepalive is set, a packet is
-queued up to be sent as soon as the device comes up. However, if the
-private key hasn't been set yet, the handshake message never sends, and
-no timer is armed to retry, since that would be pointless.
-
-But, if a user later sets a private key, the expectation is that those
-queued packets, such as a persistent keepalive, are actually sent. So
-adjust the configuration logic to account for this edge case, and add a
-test case to make sure this works.
-
-Maxim noticed this with a wg-quick(8) config to the tune of:
-
-    [Interface]
-    PostUp = wg set %i private-key somefile
-
-    [Peer]
-    PublicKey = ...
-    Endpoint = ...
-    PersistentKeepalive = 25
-
-Here, the private key gets set after the device comes up using a PostUp
-script, triggering the bug.
-
-Fixes: e7096c131e51 ("net: WireGuard secure network tunnel")
-Cc: stable@vger.kernel.org
-Reported-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
-Link: https://lore.kernel.org/wireguard/87fs7xtqrv.fsf@gmail.com/
-Signed-off-by: Jason A. Donenfeld <Jason@zx2c4.com>
----
- drivers/net/wireguard/netlink.c            | 14 +++++++++-----
- tools/testing/selftests/wireguard/netns.sh | 30 ++++++++++++++++++++++++++----
- 2 files changed, 35 insertions(+), 9 deletions(-)
-
-diff --git a/drivers/net/wireguard/netlink.c b/drivers/net/wireguard/netlink.c
-index 43c8c84e7ea8..6d1bd9f52d02 100644
---- a/drivers/net/wireguard/netlink.c
-+++ b/drivers/net/wireguard/netlink.c
-@@ -546,6 +546,7 @@ static int wg_set_device(struct sk_buff *skb, struct genl_info *info)
- 		u8 *private_key = nla_data(info->attrs[WGDEVICE_A_PRIVATE_KEY]);
- 		u8 public_key[NOISE_PUBLIC_KEY_LEN];
- 		struct wg_peer *peer, *temp;
-+		bool send_staged_packets;
- 
- 		if (!crypto_memneq(wg->static_identity.static_private,
- 				   private_key, NOISE_PUBLIC_KEY_LEN))
-@@ -564,14 +565,17 @@ static int wg_set_device(struct sk_buff *skb, struct genl_info *info)
- 		}
- 
- 		down_write(&wg->static_identity.lock);
--		wg_noise_set_static_identity_private_key(&wg->static_identity,
--							 private_key);
--		list_for_each_entry_safe(peer, temp, &wg->peer_list,
--					 peer_list) {
-+		send_staged_packets = !wg->static_identity.has_identity && netif_running(wg->dev);
-+		wg_noise_set_static_identity_private_key(&wg->static_identity, private_key);
-+		send_staged_packets = send_staged_packets && wg->static_identity.has_identity;
-+
-+		wg_cookie_checker_precompute_device_keys(&wg->cookie_checker);
-+		list_for_each_entry_safe(peer, temp, &wg->peer_list, peer_list) {
- 			wg_noise_precompute_static_static(peer);
- 			wg_noise_expire_current_peer_keypairs(peer);
-+			if (send_staged_packets)
-+				wg_packet_send_staged_packets(peer);
- 		}
--		wg_cookie_checker_precompute_device_keys(&wg->cookie_checker);
- 		up_write(&wg->static_identity.lock);
- 	}
- skip_set_private_key:
-diff --git a/tools/testing/selftests/wireguard/netns.sh b/tools/testing/selftests/wireguard/netns.sh
-index 69c7796c7ca9..405ff262ca93 100755
---- a/tools/testing/selftests/wireguard/netns.sh
-+++ b/tools/testing/selftests/wireguard/netns.sh
-@@ -514,10 +514,32 @@ n2 bash -c 'printf 0 > /proc/sys/net/ipv4/conf/all/rp_filter'
- n1 ping -W 1 -c 1 192.168.241.2
- [[ $(n2 wg show wg0 endpoints) == "$pub1	10.0.0.3:1" ]]
- 
--ip1 link del veth1
--ip1 link del veth3
--ip1 link del wg0
--ip2 link del wg0
-+ip1 link del dev veth3
-+ip1 link del dev wg0
-+ip2 link del dev wg0
-+
-+# Make sure persistent keep alives are sent when an adapter comes up
-+ip1 link add dev wg0 type wireguard
-+n1 wg set wg0 private-key <(echo "$key1") peer "$pub2" endpoint 10.0.0.1:1 persistent-keepalive 1
-+read _ _ tx_bytes < <(n1 wg show wg0 transfer)
-+[[ $tx_bytes -eq 0 ]]
-+ip1 link set dev wg0 up
-+read _ _ tx_bytes < <(n1 wg show wg0 transfer)
-+[[ $tx_bytes -gt 0 ]]
-+ip1 link del dev wg0
-+# This should also happen even if the private key is set later
-+ip1 link add dev wg0 type wireguard
-+n1 wg set wg0 peer "$pub2" endpoint 10.0.0.1:1 persistent-keepalive 1
-+read _ _ tx_bytes < <(n1 wg show wg0 transfer)
-+[[ $tx_bytes -eq 0 ]]
-+ip1 link set dev wg0 up
-+read _ _ tx_bytes < <(n1 wg show wg0 transfer)
-+[[ $tx_bytes -eq 0 ]]
-+n1 wg set wg0 private-key <(echo "$key1")
-+read _ _ tx_bytes < <(n1 wg show wg0 transfer)
-+[[ $tx_bytes -gt 0 ]]
-+ip1 link del dev veth1
-+ip1 link del dev wg0
- 
- # We test that Netlink/IPC is working properly by doing things that usually cause split responses
- ip0 link add dev wg0 type wireguard
--- 
-cgit v1.2.3-59-g8ed1b
-
diff --git a/gnu/packages/patches/openfoam-4.1-cleanup.patch b/gnu/packages/patches/openfoam-4.1-cleanup.patch
deleted file mode 100644
index 37effa5c9c..0000000000
--- a/gnu/packages/patches/openfoam-4.1-cleanup.patch
+++ /dev/null
@@ -1,243 +0,0 @@
-# This patch removes all need for the ThirdParty files of OpenFOAM.
-
-# Derived from EasyBuild patch by Ward Poelmans <wpoely86@gmail.com>.
-# Modified for GNU Guix by Paul Garlick <pgarlick@tourbillion-technology.com>.
-
-diff -ur OpenFOAM-4.x-version-4.1.org/applications/utilities/mesh/manipulation/setSet/Allwmake OpenFOAM-4.x-version-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake
---- OpenFOAM-4.x-version-4.1.org/applications/utilities/mesh/manipulation/setSet/Allwmake
-+++ OpenFOAM-4.x-version-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake
-@@ -9,7 +9,7 @@
- #
- # use readline if available
- #
--if [ -f /usr/include/readline/readline.h ]
-+if true
- then
-     echo "Found <readline/readline.h>  --  enabling readline support."
-     export COMP_FLAGS="-DHAS_READLINE"
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/bashrc OpenFOAM-4.x-version-4.1/etc/bashrc
---- OpenFOAM-4.x-version-4.1.org/etc/bashrc
-+++ OpenFOAM-4.x-version-4.1/etc/bashrc
-@@ -43,8 +43,10 @@
- # Please set to the appropriate path if the default is not correct.
- #
- [ $BASH_SOURCE ] && \
--export FOAM_INST_DIR=$(cd ${BASH_SOURCE%/*/*/*} && pwd -P) || \
-+export FOAM_INST_DIR=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P) || \
- export FOAM_INST_DIR=$HOME/$WM_PROJECT
-+# For GNU Guix: set initially for build then re-set at runtime
-+#
- # export FOAM_INST_DIR=~$WM_PROJECT
- # export FOAM_INST_DIR=/opt/$WM_PROJECT
- # export FOAM_INST_DIR=/usr/local/$WM_PROJECT
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/CGAL OpenFOAM-4.x-version-4.1/etc/config.sh/CGAL
---- OpenFOAM-4.x-version-4.1.org/etc/config.sh/CGAL
-+++ OpenFOAM-4.x-version-4.1/etc/config.sh/CGAL
-@@ -36,37 +36,7 @@
- #
- #------------------------------------------------------------------------------
-
--boost_version=boost-system
--cgal_version=cgal-system
--#cgal_version=CGAL-4.8
--
--if [ -z "$SOURCE_CGAL_VERSIONS_ONLY" ]
--then
--
--    common_path=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
--
--    export BOOST_ARCH_PATH=$common_path/$boost_version
--    export CGAL_ARCH_PATH=$common_path/$cgal_version
--
--    if [ "$FOAM_VERBOSE" -a "$PS1" ]
--    then
--        echo "Using CGAL and boost" 1>&2
--        echo "    $cgal_version at $CGAL_ARCH_PATH" 1>&2
--        echo "    $boost_version at $BOOST_ARCH_PATH" 1>&2
--    fi
--
--    if [ -d "$CGAL_ARCH_PATH" -a "$cgal_version" != "cgal-system" ]
--    then
--        _foamAddLib $CGAL_ARCH_PATH/lib
--    fi
--
--    if [ -d "$BOOST_ARCH_PATH" -a "$boost_version" != "boost-system" ]
--    then
--        _foamAddLib $BOOST_ARCH_PATH/lib
--    fi
--
--    unset boost_version cgal_version common_path
--
--fi
-+export CGAL_ARCH_PATH=$CGAL_ROOT
-+export BOOST_ARCH_PATH=$BOOST_ROOT
-
- #------------------------------------------------------------------------------
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/gperftools OpenFOAM-4.x-version-4.1/etc/config.sh/gperftools
---- OpenFOAM-4.x-version-4.1.org/etc/config.sh/gperftools
-+++ OpenFOAM-4.x-version-4.1/etc/config.sh/gperftools
-@@ -29,13 +29,5 @@
- #
- #------------------------------------------------------------------------------
-
--version=svn
--gperftools_install=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
--
--GPERFTOOLS_VERSION=gperftools-$version
--GPERFTOOLS_ARCH_PATH=$gperftools_install/$GPERFTOOLS_VERSION
--
--export PATH=$GPERFTOOLS_ARCH_PATH/bin:$PATH
--export LD_LIBRARY_PATH=$GPERFTOOLS_ARCH_PATH/lib:$LD_LIBRARY_PATH
-
- #------------------------------------------------------------------------------
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/metis OpenFOAM-4.x-version-4.1/etc/config.sh/metis
---- OpenFOAM-4.x-version-4.1.org/etc/config.sh/metis
-+++ OpenFOAM-4.x-version-4.1/etc/config.sh/metis
-@@ -34,7 +34,7 @@
- #
- #------------------------------------------------------------------------------
-
--export METIS_VERSION=metis-5.1.0
--export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$METIS_VERSION
-+export METIS_VERSION=metis-$METISVERSION
-+export METIS_ARCH_PATH=$METIS_ROOT
-
- #------------------------------------------------------------------------------
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/scotch OpenFOAM-4.x-version-4.1/etc/config.sh/scotch
---- OpenFOAM-4.x-version-4.1.org/etc/config.sh/scotch
-+++ OpenFOAM-4.x-version-4.1/etc/config.sh/scotch
-@@ -37,7 +37,7 @@
- #
- #------------------------------------------------------------------------------
-
--export SCOTCH_VERSION=scotch_6.0.3
--export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$SCOTCH_VERSION
-+export SCOTCH_VERSION=scotch_$SCOTCHVERSION
-+export SCOTCH_ARCH_PATH=$SCOTCH_ROOT
-
- #------------------------------------------------------------------------------
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/settings OpenFOAM-4.x-version-4.1/etc/config.sh/settings
---- OpenFOAM-4.x-version-4.1.org/etc/config.sh/settings
-+++ OpenFOAM-4.x-version-4.1/etc/config.sh/settings
-@@ -279,6 +279,9 @@
-     ;;
- system)
-     # Use system compiler
-+    # Use system GMP and MPFR packages
-+    export GMP_ARCH_PATH=$GMP_ROOT
-+    export MPFR_ARCH_PATH=$MPFR_ROOT
-     ;;
- *)
-     echo "Warn: WM_COMPILER_TYPE='$WM_COMPILER_TYPE' is unsupported" 1>&2
-diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-4.x-version-4.1/src/parallel/decompose/ptscotchDecomp/Make/options
---- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/ptscotchDecomp/Make/options
-+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/ptscotchDecomp/Make/options
-@@ -5,8 +5,7 @@
-     $(PFLAGS) $(PINC) \
-     -I$(SCOTCH_ROOT)/include \
-     -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \
--    -I/usr/include/scotch \
-     -I../decompositionMethods/lnInclude
-
- LIB_LIBS = \
--    -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt
-+    -L$(SCOTCH_ROOT)/lib -L$(MPI_ARCH_PATH)/lib -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt
-diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-4.x-version-4.1/src/parallel/decompose/scotchDecomp/Make/options
---- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/scotchDecomp/Make/options
-+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/scotchDecomp/Make/options
-@@ -9,8 +9,7 @@
-     $(PFLAGS) $(PINC) \
-     -I$(SCOTCH_ROOT)/include \
-     -I$(SCOTCH_ARCH_PATH)/include \
--    -I/usr/include/scotch \
-     -I../decompositionMethods/lnInclude
-
- LIB_LIBS = \
--    -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt
-+    -L$(SCOTCH_ROOT)/lib -lscotch -lscotcherrexit -lrt
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/makefiles/general OpenFOAM-4.x-version-4.1/wmake/makefiles/general
---- OpenFOAM-4.x-version-4.1.org/wmake/makefiles/general
-+++ OpenFOAM-4.x-version-4.1/wmake/makefiles/general
-@@ -33,7 +33,6 @@
- # The Makefile uses a POSIX shell
- #------------------------------------------------------------------------------
- 
--SHELL           = /bin/sh
- 
- 
- #------------------------------------------------------------------------------
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmake OpenFOAM-4.x-version-4.1/wmake/wmake
---- OpenFOAM-4.x-version-4.1.org/wmake/wmake
-+++ OpenFOAM-4.x-version-4.1/wmake/wmake
-@@ -163,7 +163,7 @@
- then
-     if [ "$WM_NCOMPPROCS" -gt 1 -a ! "$MAKEFLAGS" ]
-     then
--        lockDir=$HOME/.$WM_PROJECT/.wmake
-+        lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
- 
-         if [ -d $lockDir ]
-         then
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmakeScheduler OpenFOAM-4.x-version-4.1/wmake/wmakeScheduler
---- OpenFOAM-4.x-version-4.1.org/wmake/wmakeScheduler
-+++ OpenFOAM-4.x-version-4.1/wmake/wmakeScheduler
-@@ -53,7 +53,7 @@
- # csh sets HOST, bash sets HOSTNAME
- : ${HOST:=$HOSTNAME}
- 
--lockDir=$HOME/.$WM_PROJECT/.wmake
-+lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
- 
- # Fallback - 1 core on current host
- : ${WM_HOSTS:=$HOST:1}
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmakeSchedulerUptime OpenFOAM-4.x-version-4.1/wmake/wmakeSchedulerUptime
---- OpenFOAM-4.x-version-4.1.org/wmake/wmakeSchedulerUptime
-+++ OpenFOAM-4.x-version-4.1/wmake/wmakeSchedulerUptime
-@@ -53,7 +53,7 @@
- # csh sets HOST, bash sets HOSTNAME
- : ${HOST:=$HOSTNAME}
- 
--lockDir=$HOME/.$WM_PROJECT/.wmake
-+lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
- # Fallback - 1 core on current host
- : ${WM_HOSTS:=$HOST:1}
- 
-diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/metisDecomp/metisDecomp.C OpenFOAM-4.x-version-4.1/src/parallel/decompose/metisDecomp/metisDecomp.C
---- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/metisDecomp/metisDecomp.C
-+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/metisDecomp/metisDecomp.C
-@@ -67,7 +67,7 @@
- 
-     // Processor weights initialised with no size, only used if specified in
-     // a file
--    Field<scalar> processorWeights;
-+    Field<floatScalar> processorWeights;
- 
-     // Cell weights (so on the vertices of the dual)
-     List<label> cellWeights;
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/rules/General/CGAL OpenFOAM-4.x-version-4.1/wmake/rules/General/CGAL
---- OpenFOAM-4.x-version-4.1.org/wmake/rules/General/CGAL
-+++ OpenFOAM-4.x-version-4.1/wmake/rules/General/CGAL
-@@ -6,9 +6,10 @@
-     -I/usr/include
- 
- CGAL_LIBS = \
--    -L$(MPFR_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
--    -L$(GMP_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
-+    -L$(MPFR_ARCH_PATH)/lib \
-+    -L$(GMP_ARCH_PATH)/lib \
-     -L$(BOOST_ARCH_PATH)/lib \
-     -L$(CGAL_ARCH_PATH)/lib \
-     -lCGAL \
-+    -lgmp \
-     -lmpfr
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/rules/linux64Gcc/c++ OpenFOAM-4.x-version-4.1/wmake/rules/linux64Gcc/c++
---- OpenFOAM-4.x-version-4.1.org/wmake/rules/linux64Gcc/c++
-+++ OpenFOAM-4.x-version-4.1/wmake/rules/linux64Gcc/c++
-@@ -20,5 +20,5 @@
-
- LINK_LIBS   = $(c++DBUG)
-
--LINKLIBSO   = $(CC) $(c++FLAGS) -shared -Xlinker --add-needed -Xlinker --no-as-needed
--LINKEXE     = $(CC) $(c++FLAGS) -Xlinker --add-needed -Xlinker --no-as-needed
-+LINKLIBSO   = $(CC) $(c++FLAGS) $(LDFLAGS) -shared -Xlinker --add-needed -Xlinker --no-as-needed
-+LINKEXE     = $(CC) $(c++FLAGS) $(LDFLAGS) -Xlinker --add-needed -Xlinker --no-as-needed
diff --git a/gnu/packages/patches/qtbase-qmake-use-libname.patch b/gnu/packages/patches/qtbase-qmake-use-libname.patch
new file mode 100644
index 0000000000..0bc2094d86
--- /dev/null
+++ b/gnu/packages/patches/qtbase-qmake-use-libname.patch
@@ -0,0 +1,53 @@
+Patch retrieved from NixOS
+https://raw.githubusercontent.com/NixOS/nixpkgs/master/pkgs/development/libraries/qt-6/patches/0001-qtbase-qmake-always-use-libname-instead-of-absolute-.patch
+
+From 8880bc263a366aeb82056f0bf3f1b17b6ec26900 Mon Sep 17 00:00:00 2001
+From: Nick Cao <nickcao@nichi.co>
+Date: Thu, 13 Apr 2023 23:42:29 +0800
+Subject: [PATCH 1/6] qtbase: qmake: always use libname instead of absolute
+ path in qmake files
+
+In generated qmake files, absolute paths to qt libraries are embedded
+and then used in linker flags. However as the libraries can be provided
+by qt modules other than the one currently being built, the ebedded
+paths can be incorrect.
+---
+ cmake/QtFinishPrlFile.cmake      | 7 ++++---
+ cmake/QtGenerateLibHelpers.cmake | 3 ---
+ 2 files changed, 4 insertions(+), 6 deletions(-)
+
+diff --git a/cmake/QtFinishPrlFile.cmake b/cmake/QtFinishPrlFile.cmake
+index 32169e418c..4e754af367 100644
+--- a/cmake/QtFinishPrlFile.cmake
++++ b/cmake/QtFinishPrlFile.cmake
+@@ -61,9 +61,10 @@ foreach(line ${lines})
+                         endif()
+                         list(APPEND adjusted_libs "-framework" "${CMAKE_MATCH_1}")
+                     else()
+-                        # Not a framework, transform the Qt module into relocatable relative path.
+-                        qt_strip_library_version_suffix(relative_lib "${relative_lib}")
+-                        list(APPEND adjusted_libs "$$[QT_INSTALL_LIBS]/${relative_lib}")
++                        # Not a framework, extract the library name and prepend an -l to make
++                        # it relocatable.
++                        qt_transform_absolute_library_paths_to_link_flags(lib_with_link_flag "${lib}")
++                        list(APPEND adjusted_libs "${lib_with_link_flag}")
+                     endif()
+                 endif()
+             else()
+diff --git a/cmake/QtGenerateLibHelpers.cmake b/cmake/QtGenerateLibHelpers.cmake
+index e3f4bbf881..f8bd26acc7 100644
+--- a/cmake/QtGenerateLibHelpers.cmake
++++ b/cmake/QtGenerateLibHelpers.cmake
+@@ -70,9 +70,6 @@ function(qt_transform_absolute_library_paths_to_link_flags out_var library_path_
+             string(TOLOWER "${dir}" dir_lower)
+             # If library_path isn't in default link directories, we should add it to link flags.
+             list(FIND IMPLICIT_LINK_DIRECTORIES_LOWER "${dir_lower}" index)
+-            if(${index} EQUAL -1)
+-                list(APPEND out_list "-L\"${dir}\"")
+-            endif()
+             list(APPEND out_list "${lib_name_with_link_flag}")
+         else()
+             list(APPEND out_list "${library_path}")
+-- 
+2.39.2
+