summaryrefslogtreecommitdiff
path: root/gnu/packages
diff options
context:
space:
mode:
authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2020-12-16 22:59:42 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-12-17 11:26:53 +0100
commit04a05946625fc732afc7720eb3fd477901c89953 (patch)
tree477da9bb037b356109b8590e3203b6b05d8fb681 /gnu/packages
parente4b0794e52d952da655953285c7ad793b3708418 (diff)
gnu: Add r-org-eck12-eg-db.
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 195128a190..41cbcf68e4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -50,6 +50,33 @@
;;; Annotations
+(define-public r-org-eck12-eg-db
+ (package
+ (name "r-org-eck12-eg-db")
+ (version "3.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "org.EcK12.eg.db" version 'annotation))
+ (sha256
+ (base32 "0c4p6jr83k0gm6pvn760yr8xf33wggrfcr6fg7a42a96bcf817gs"))))
+ (properties
+ `((upstream-name . "org.EcK12.eg.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://bioconductor.org/packages/org.EcK12.eg.db")
+ (synopsis "Genome wide annotation for E coli strain K12")
+ (description
+ "This package provides genome wide annotation for E coli strain K12,
+primarily based on mapping using Entrez Gene identifiers. Entrez Gene is
+National Center for Biotechnology Information (NCBI)’s database for
+gene-specific information. Entrez Gene maintains records from genomes which
+have been completely sequenced, which have an active research community to
+submit gene-specific information, or which are scheduled for intense sequence
+analysis.")
+ (license license:artistic2.0)))
+
(define-public r-reactome-db
(package
(name "r-reactome-db")