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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2020-12-16 23:03:41 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-12-17 11:26:53 +0100
commit7395458d40e156d683a0ce3604c19b38f4488c13 (patch)
tree7e1d4881073475f24f965eaefef3299ba72b0f88 /gnu/packages
parenteb2f1a7dd94d816cfe5741f4053fc7e9d87eb8f4 (diff)
gnu: Add r-kegggraph.
* gnu/packages/bioconductor.scm (r-kegggraph): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 76c1423bc9..9189e53d17 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9213,3 +9213,29 @@ CATALYST (Cytometry dATa anALYSis Tools) to provide a pipeline for
preprocessing of cytometry data, including i) normalization using bead
standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
(license license:gpl2+)))
+
+(define-public r-kegggraph
+ (package
+ (name "r-kegggraph")
+ (version "1.50.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "KEGGgraph" version))
+ (sha256
+ (base32 "1h293hn02ysm923bh9gxk87xv663xiqchqcvpaxpla9c3yrgkx2v"))))
+ (properties `((upstream-name . "KEGGgraph")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-graph" ,r-graph)
+ ("r-rcurl" ,r-rcurl)
+ ("r-xml" ,r-xml)))
+ (home-page "https://bioconductor.org/packages/KEGGgraph")
+ (synopsis "Graph approach to Kegg Pathway database in R and Bioconductor")
+ (description
+ "@code{r-kegggraph} is an interface between Kegg Pathway database and graph
+object as well as a collection of tools to analyze, dissect and visualize these
+graphs. It parses the regularly updated kgml (Kegg XML) files into graph models
+maintaining all essential pathway attributes. The package offers
+functionalities including parsing, graph operation, visualization and etc.")
+ (license license:gpl2+)))