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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-06-23 11:42:57 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-10-27 16:40:18 +0200
commita8e0069f87d65185bd426041373051de80057414 (patch)
tree4be224a5cc2c374d6b7d329de7c2546423c5d0ee /gnu/packages
parentf1750236c139a5015631db0f4b70a4d8b7d76b5b (diff)
gnu: Add r-assessorf.
* gnu/packages/bioconductor.scm (r-assessorf): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm29
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a0ecec8498..67a62faa46 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2317,6 +2317,35 @@ reproducible gene expression signatures capable of accurately distinguishing
tumor samples from healthy controls.")
(license license:artistic2.0)))
+(define-public r-assessorf
+ (package
+ (name "r-assessorf")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AssessORF" version))
+ (sha256
+ (base32
+ "1l87bpny9k3jbzbzmb9h2ijvblrj471gqv26fyzbvb3vr6y406z7"))))
+ (properties `((upstream-name . "AssessORF")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biostrings
+ r-decipher
+ r-genomicranges
+ r-iranges))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/AssessORF")
+ (synopsis "Assess gene predictions using proteomics and evolutionary conservation")
+ (description
+ "In order to assess the quality of a set of predicted genes for a genome,
+evidence must first be mapped to that genome. Next, each gene must be
+categorized based on how strong the evidence is for or against that gene. The
+AssessORF package provides the functions and class structures necessary for
+accomplishing those tasks, using proteomics hits and evolutionarily conserved
+start codons as the forms of evidence.")
+ (license license:gpl3)))
+
(define-public r-asset
(package
(name "r-asset")