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author | Roel Janssen <roel@gnu.org> | 2020-11-13 11:29:20 +0100 |
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committer | Roel Janssen <roel@gnu.org> | 2020-11-13 14:49:27 +0100 |
commit | da4a38edad52f7bb5a8d41465d09f3f0197fd0b7 (patch) | |
tree | e541181b1eabcd5c02528e35b2364f0f0dcfeba1 /gnu/packages | |
parent | 3ede804f6d4c38ff0b9a5705544a8c35f6827ff1 (diff) |
gnu: Add samtools-1.9.
* gnu/packages/bioinformatics.scm (samtools-1.9): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ba86333fc3..e047aebd1d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5699,6 +5699,31 @@ variant calling (in conjunction with bcftools), and a simple alignment viewer.") (license license:expat))) +(define-public samtools-1.9 + (package (inherit samtools) + (name "samtools") + (version "1.9") + (source + (origin + (method url-fetch) + (uri + (string-append "mirror://sourceforge/samtools/samtools/" + version "/samtools-" version ".tar.bz2")) + (sha256 + (base32 + "10ilqbmm7ri8z431sn90lvbjwizd0hhkf9rcqw8j823hf26nhgq8")) + (modules '((guix build utils))) + (snippet '(begin + ;; Delete bundled htslib. + (delete-file-recursively "htslib-1.9") + #t)))) + (inputs + `(("htslib" ,htslib-1.9) + ("ncurses" ,ncurses) + ("perl" ,perl) + ("python" ,python) + ("zlib" ,zlib))))) + (define-public samtools-0.1 ;; This is the most recent version of the 0.1 line of samtools. The input ;; and output formats differ greatly from that used and produced by samtools |