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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2023-10-31 11:57:20 +0100
committerRicardo Wurmus <rekado@elephly.net>2023-10-31 13:58:08 +0100
commit192514e869875e118d686da5187491fc41ea82ec (patch)
tree03f7f023ab1d5862a39b204cd21b8f723cd92c5d /gnu
parentd24c1078d2274e2b8b1094c64e6f90081f20faf0 (diff)
gnu: Add r-r4rna.
* gnu/packages/bioconductor.scm (r-r4rna): New variable. Change-Id: I1bde2a17b0ba4a97fa54161744f048dbfaf2217a
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm23
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 45ab55a876..ffac75edcd 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7779,6 +7779,29 @@ the Human Protein Atlas project.")
interactions from 3C-seq assay.")
(license license:gpl3)))
+(define-public r-r4rna
+ (package
+ (name "r-r4rna")
+ (version "1.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "R4RNA" version))
+ (sha256
+ (base32 "1i4c9477xsp3hq5kxydrimhl6g8vshwbqgnhap5n1ykxbsval1pp"))))
+ (properties `((upstream-name . "R4RNA")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biostrings))
+ (home-page "https://www.e-rna.org/r-chie/")
+ (synopsis "RNA visualization and analysis")
+ (description
+ "This package provides a package for RNA basepair analysis, including the
+visualization of basepairs as arc diagrams for easy comparison and annotation of
+sequence and structure. Arc diagrams can additionally be projected onto
+multiple sequence alignments to assess basepair conservation and covariation,
+with numerical methods for computing statistics for each.")
+ (license license:gpl3)))
+
(define-public r-raggedexperiment
(package
(name "r-raggedexperiment")