diff options
| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-02-02 17:00:23 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-02-03 11:34:42 +0100 |
| commit | 59b102cab9d66ba0c561ed9ed8df04f9fc340bd2 (patch) | |
| tree | 5acdceffc4ea9ac49dae53bc06dcf4e206e6aba1 /gnu | |
| parent | 89d76adf98e37ecef65cc71804df5b5fada8e774 (diff) | |
gnu: Add python-demuxem.
* gnu/packages/bioinformatics.scm (python-demuxem): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b8676b0ece..1da464f3c5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1092,6 +1092,35 @@ from high-throughput single-cell RNA sequencing (scRNA-seq) data.") and sequence consensus.") (license license:expat))) +(define-public python-demuxem + (package + (name "python-demuxem") + (version "0.1.7") + (source (origin + (method url-fetch) + (uri (pypi-uri "demuxEM" version)) + (sha256 + (base32 + "1bhyxqjk44bmyd26m1smapf68wyf7252kk65i27k50dd3kswgnd6")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-docopt + python-importlib-metadata + python-numpy + python-pandas + python-pegasusio + python-scikit-learn + python-scipy + python-seaborn)) + (native-inputs (list python-cython python-setuptools-scm)) + (home-page "https://github.com/lilab-bcb/demuxEM") + (synopsis "Analyze cell-hashing/nucleus-hashing data") + (description + "This is a Python module for analyzing cell-hashing/nucleus-hashing data. +It is the demultiplexing module of Pegasus, which is used by Cumulus in the +demultiplexing step.") + (license license:bsd-3))) + (define-public python-hclust2 (package (name "python-hclust2") |