diff options
author | Ricardo Wurmus <rekado@elephly.net> | 2023-05-12 22:23:23 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2023-05-12 22:23:23 +0200 |
commit | 5d446e439dfe1aa1a0ff68d52ed0f16ef3490e2f (patch) | |
tree | 3d49f998d06fb6a5dcbe8bd10f4dd39dda470908 /gnu | |
parent | fac8721bfd9516fec63c39c2bfe8ccbd3f6f0e1e (diff) |
gnu: phast: Simplify by using G-expression.
* gnu/packages/bioinformatics.scm (phast)[arguments]: Use G-expression and
drop trailing #T from build phases.
Diffstat (limited to 'gnu')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 75 |
1 files changed, 37 insertions, 38 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b3576159ed..99344b168a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17902,44 +17902,43 @@ containing the reference genome as well.") "10lpbllvny923jjbbyrpxahhd1m5h7sbj9gx7rd123rg10mlidki")))) (build-system gnu-build-system) (arguments - `(#:make-flags - ,#~(list "CC=gcc" - (string-append "DESTDIR=" #$output)) - #:phases - (modify-phases %standard-phases - (replace 'configure - (lambda* (#:key inputs outputs #:allow-other-keys) - ;; Fix syntax - (substitute* "test/Makefile" - ((" ") " ")) - (substitute* "Makefile" - (("CLAPACKPATH=/usr/lib") - (string-append "CLAPACKPATH=" - (assoc-ref inputs "clapack") "/lib"))) - ;; Renaming the libraries is not necessary with our version of - ;; CLAPACK. - (substitute* "src/lib/Makefile" - (("ifdef CLAPACKPATH") "ifdef UNNECESSARY")) - (substitute* "src/make-include.mk" - (("-lblaswr") "-lblas") - (("-ltmg") "-ltmglib") - (("liblapack.a") "liblapack.so") - (("libblas.a") "libblas.so") - (("libf2c.a") "libf2c.so")) - (substitute* "src/Makefile" - (("/opt") "/share") - (("/usr/") "/")) - #t)) - (replace 'check - (lambda _ - (setenv "PATH" - (string-append (getcwd) "/bin:" (getenv "PATH"))) - ;; Disable broken test - (substitute* "test/Makefile" - ((".*if.*hmrc_summary" m) (string-append "#" m))) - ;; Only run the msa_view tests because the others fail for - ;; unknown reasons. - (invoke "make" "-C" "test" "msa_view")))))) + (list + #:make-flags + #~(list "CC=gcc" (string-append "DESTDIR=" #$output)) + #:phases + #~(modify-phases %standard-phases + (replace 'configure + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; Fix syntax + (substitute* "test/Makefile" + ((" ") " ")) + (substitute* "Makefile" + (("CLAPACKPATH=/usr/lib") + (string-append "CLAPACKPATH=" + #$(this-package-input "clapack") "/lib"))) + ;; Renaming the libraries is not necessary with our version of + ;; CLAPACK. + (substitute* "src/lib/Makefile" + (("ifdef CLAPACKPATH") "ifdef UNNECESSARY")) + (substitute* "src/make-include.mk" + (("-lblaswr") "-lblas") + (("-ltmg") "-ltmglib") + (("liblapack.a") "liblapack.so") + (("libblas.a") "libblas.so") + (("libf2c.a") "libf2c.so")) + (substitute* "src/Makefile" + (("/opt") "/share") + (("/usr/") "/")))) + (replace 'check + (lambda _ + (setenv "PATH" + (string-append (getcwd) "/bin:" (getenv "PATH"))) + ;; Disable broken test + (substitute* "test/Makefile" + ((".*if.*hmrc_summary" m) (string-append "#" m))) + ;; Only run the msa_view tests because the others fail for + ;; unknown reasons. + (invoke "make" "-C" "test" "msa_view")))))) (inputs (list clapack)) (native-inputs |