diff options
author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-12-05 16:21:52 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2022-12-12 15:37:15 +0100 |
commit | 85d5ce49015dfd93c1b3d37cafe83d017eedcfd4 (patch) | |
tree | 14bd32f0c875d7883f00b41df50f33437860104d /gnu | |
parent | 97b36ca4d3ab99190962a90da9627d559475dbd9 (diff) |
gnu: Add r-altcdfenvs.
* gnu/packages/bioconductor.scm (r-altcdfenvs): New variable.
Diffstat (limited to 'gnu')
-rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1d1aae322c..fbd23d0f6d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2492,6 +2492,37 @@ mapped reads). It is currently designed for un-stranded paired-end RNA-seq data.") (license license:gpl2+))) +(define-public r-altcdfenvs + (package + (name "r-altcdfenvs") + (version "2.60.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "altcdfenvs" version)) + (sha256 + (base32 + "0fm4l93j6nm1w1w57zzryc1hkzapp8l16pkwjzdzllvwvsnsg8r0")))) + (properties `((upstream-name . "altcdfenvs"))) + (build-system r-build-system) + (propagated-inputs + (list r-affy + r-biobase + r-biocgenerics + r-biostrings + r-hypergraph + r-makecdfenv + r-s4vectors)) + (home-page "https://bioconductor.org/packages/altcdfenvs") + (synopsis + "Convenience data structures and functions to handle CDF environments") + (description + "The package is usable with Affymetrix GeneChip short oligonucleotide +arrays, and it can be adapted or extended to other platforms. It is able to +modify or replace the grouping of probes in the probe sets. Also, the package +contains simple functions to read R connections in the FASTA format and it can +create an alternative mapping from sequences.") + (license license:gpl2+))) + (define-public r-aneufinder (package (name "r-aneufinder") |