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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-02-10 19:41:54 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-02-10 19:41:54 +0100 |
| commit | 8a0b625a2d0006621cc90ce85cd1396ac2919b79 (patch) | |
| tree | f3085fdb1f2b750270f4dc0ec5ff6597cd4d2534 /gnu | |
| parent | fea66096a291f5eaf762da430e339feacac391b4 (diff) | |
gnu: scregseg: Update to 0.1.3.
* gnu/packages/bioinformatics.scm (scregseg): Update to 0.1.3.
[source]: Simplify snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Add phases 'set-numba-cache-dir and 'build-extensions; enable
tests.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 15 insertions, 9 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ad8754f106..5717b4844e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17787,7 +17787,7 @@ populations.") (define-public scregseg (package (name "scregseg") - (version "0.1.1") + (version "0.1.3") (source (origin (method git-fetch) (uri (git-reference @@ -17796,16 +17796,22 @@ populations.") (file-name (git-file-name name version)) (sha256 (base32 - "1k8hllr5if6k2mm2zj391fv40sfc008cjm04l9vgfsdppb80i112")) + "07g2barywa1wi8mggbxkbxqjw1fzd0a0l9cjdbkx4s40imb1dbxb")) (snippet - #~(begin - (use-modules ((guix build utils))) - (delete-file "src/scregseg/_utils.c"))))) - (build-system python-build-system) + '(delete-file "src/scregseg/_utils.c")))) + (build-system pyproject-build-system) (arguments - `(#:tests? #false ; tests require network access - #:phases - (modify-phases %standard-phases + (list + #:phases + '(modify-phases %standard-phases + ;; Numba needs a writable dir to cache functions. + (add-before 'check 'set-numba-cache-dir + (lambda _ + (setenv "NUMBA_CACHE_DIR" "/tmp"))) + ;; Cython extensions have to be built before running the tests. + (add-before 'check 'build-extensions + (lambda _ + (invoke "python" "setup.py" "build_ext" "--inplace"))) (add-after 'unpack 'do-not-fail-to-find-sklearn (lambda _ ;; XXX: I have no idea why it cannot seem to find sklearn. |