summaryrefslogtreecommitdiff
path: root/gnu
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2023-12-15 17:25:58 +0100
committerRicardo Wurmus <rekado@elephly.net>2023-12-15 17:25:58 +0100
commitc5f25353462c8bf574e20bd874b38ccea584ec7a (patch)
tree127d580a6373498daf3dfc5636f65cfc11125471 /gnu
parent9013d47d5e268fcbcbda8571f3538f9ca5e3cb53 (diff)
gnu: r-reportingtools: Update to 2.42.3.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.42.3. [source]: Adjust snippet. [arguments]: Use minify-build-system in 'process-javascript phase. [native-inputs]: Remove r-knitr; add r-rmarkdown. Change-Id: I1c00e1a1d8095f40da29b57b8e82de493fcff26e
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm37
1 files changed, 15 insertions, 22 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 79b94a9450..c60c51f34c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9837,18 +9837,16 @@ region sets and other genomic features.")
(define-public r-reportingtools
(package
(name "r-reportingtools")
- (version "2.39.0")
+ (version "2.42.3")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ReportingTools" version))
(sha256
(base32
- "15h7vqdxfv7y0f82ff7a8brqnscs324x22izlkgjk2wqahnmr2l1"))
+ "109vmrdsjdjnfrlcdyadzbwz9a50hqaahf7dawwxkbbh4mmdih78"))
(snippet
- '(for-each delete-file
- (list "inst/doc/jslib/jquery-1.8.0.min.js"
- "inst/extdata/jslib/jquery-1.8.0.min.js")))))
+ '(delete-file "inst/extdata/jslib/jquery-1.8.0.min.js"))))
(properties
`((upstream-name . "ReportingTools")))
(build-system r-build-system)
@@ -9856,25 +9854,20 @@ region sets and other genomic features.")
(list
#:modules '((guix build utils)
(guix build r-build-system)
- (srfi srfi-1))
+ (guix build minify-build-system)
+ (ice-9 match))
+ #:imported-modules
+ `(,@%r-build-system-modules
+ (guix build minify-build-system))
#:phases
- '(modify-phases %standard-phases
+ '(modify-phases (@ (guix build r-build-system) %standard-phases)
(add-after 'unpack 'process-javascript
(lambda* (#:key inputs #:allow-other-keys)
- (call-with-values
- (lambda ()
- (unzip2
- `((,(assoc-ref inputs "_")
- "inst/doc/jslib/jquery-1.8.0.min.js"))))
- (lambda (sources targets)
- (for-each (lambda (source target)
- (format #true "Processing ~a --> ~a~%"
- source target)
- (invoke "esbuild" source "--minify"
- (string-append "--outfile=" target)))
- sources targets)))
- (copy-file "inst/doc/jslib/jquery-1.8.0.min.js"
- "inst/extdata/jslib/jquery-1.8.0.min.js"))))))
+ (for-each (match-lambda
+ ((source . target)
+ (minify source #:target target)))
+ `((,(assoc-ref inputs "_")
+ . "inst/extdata/jslib/jquery-1.8.0.min.js"))))))))
(propagated-inputs
(list r-annotate
r-annotationdbi
@@ -9896,7 +9889,7 @@ region sets and other genomic features.")
r-r-utils
r-xml))
(native-inputs
- (list esbuild r-knitr
+ (list esbuild r-rmarkdown
(origin
(method url-fetch)
(uri "https://code.jquery.com/jquery-1.8.0.js")