diff options
Diffstat (limited to 'gnu/packages/algebra.scm')
| -rw-r--r-- | gnu/packages/algebra.scm | 135 |
1 files changed, 106 insertions, 29 deletions
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index 79785bd463..ff6e5189fd 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2013, 2015, 2017, 2018, 2021 Ludovic Courtès <ludo@gnu.org> -;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr> +;;; Copyright © 2016–2022 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2014, 2018 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016, 2018, 2019, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> @@ -328,7 +328,7 @@ precision.") (define-public giac (package (name "giac") - (version "1.7.0-43") + (version "1.7.0-45") (source (origin (method url-fetch) @@ -340,7 +340,7 @@ precision.") "~parisse/debian/dists/stable/main/source/" "giac_" version ".tar.gz")) (sha256 - (base32 "0zsa506isvmixwwg0xgvxhlns6i75jsc3qjzcrny4fl11hkj9xw5")))) + (base32 "19hxbx27n5zby96d4pzhxxqn7mzk29g8sxn08fi638l17lr9x2q2")))) (build-system gnu-build-system) (arguments `(#:modules ((ice-9 ftw) @@ -378,33 +378,33 @@ precision.") (delete-file (string-append out "/bin/xcasnew")))))))) (inputs ;; TODO: Add libnauty, unbundle "libmicropython.a". - `(("fltk" ,fltk) - ("glpk" ,glpk-4) - ("gmp" ,gmp) - ("gsl" ,gsl) - ("lapack" ,lapack) - ("libao" ,ao) - ("libjpeg" ,libjpeg-turbo) - ("libpng" ,libpng) - ("libsamplerate" ,libsamplerate) - ("libx11" ,libx11) - ("libxinerama" ,libxinerama) - ("libxft" ,libxft) - ("libxt" ,libxt) - ("mesa" ,mesa) - ("mpfi" ,mpfi) - ("mpfr" ,mpfr) - ("ntl" ,ntl) - ("perl" ,perl) - ("pari-gp" ,pari-gp) - ("tcsh" ,tcsh))) + (list ao + fltk + glpk-4 + gmp + gsl + lapack + libjpeg-turbo + libpng + libsamplerate + libx11 + libxft + libxinerama + libxt + mesa + mpfi + mpfr + ntl + pari-gp + perl + tcsh)) (native-inputs - `(("bison" ,bison) - ("flex" ,flex) - ("hevea" ,hevea) - ("python" ,python-wrapper) - ("readline" ,readline) - ("texlive" ,texlive-tiny))) + (list bison + flex + hevea + python-wrapper + readline + texlive-tiny)) (home-page "https://www-fourier.ujf-grenoble.fr/~parisse/giac.html") (synopsis "Computer algebra system") (description @@ -1044,6 +1044,44 @@ features, and more.") ;; See 'COPYING.README' for details. (license license:mpl2.0))) +(define-public eigen-benchmarks + (package + (inherit eigen) + (name "eigen-benchmarks") + (arguments + '(#:phases (modify-phases %standard-phases + (delete 'configure) + (replace 'build + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin"))) + (define (compile file) + (format #t "compiling '~a'...~%" file) + (let ((target + (string-append bin "/" + (basename file ".cpp")))) + (invoke "c++" "-o" target file + "-I" ".." "-O2" "-g" + "-lopenblas" "-Wl,--as-needed"))) + + (mkdir-p bin) + (with-directory-excursion "bench" + ;; There are more benchmarks, of varying quality. + ;; Here we pick some that appear to be useful. + (for-each compile + '("benchBlasGemm.cpp" + "benchCholesky.cpp" + ;;"benchEigenSolver.cpp" + "benchFFT.cpp" + "benchmark-blocking-sizes.cpp")))))) + (delete 'install)))) + (inputs (list boost openblas)) + + ;; Mark as tunable to take advantage of SIMD code in Eigen. + (properties '((tunable? . #t))) + + (synopsis "Micro-benchmarks of the Eigen linear algebra library"))) + (define-public eigen-for-tensorflow (let ((changeset "fd6845384b86") (revision "1")) @@ -1131,6 +1169,45 @@ xtensor provides: @end itemize") (license license:bsd-3))) +(define-public xtensor-benchmark + (package + (inherit xtensor) + (name "xtensor-benchmark") + (arguments + `(#:configure-flags (list "-DBUILD_BENCHMARK=ON" + "-DDOWNLOAD_GBENCHMARK=OFF") + #:tests? #f + #:phases (modify-phases %standard-phases + (add-after 'unpack 'remove-march=native + (lambda _ + (substitute* "benchmark/CMakeLists.txt" + (("-march=native") "")))) + (add-after 'unpack 'link-with-googlebenchmark + (lambda _ + (substitute* "benchmark/CMakeLists.txt" + (("find_package\\(benchmark.*" all) + (string-append + all "\n" + "set(GBENCHMARK_LIBRARIES benchmark)\n"))))) + (replace 'build + (lambda _ + (invoke "make" "benchmark_xtensor" "-j" + (number->string (parallel-job-count))))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + ;; Install nothing but the executable. + (let ((out (assoc-ref outputs "out"))) + (install-file "benchmark/benchmark_xtensor" + (string-append out "/bin")))))))) + (synopsis "Benchmarks of the xtensor library") + (native-inputs '()) + (inputs + (modify-inputs (package-native-inputs xtensor) + (prepend googlebenchmark xsimd))) + + ;; Mark as tunable to take advantage of SIMD code in xsimd/xtensor. + (properties '((tunable? . #t))))) + (define-public gap (package (name "gap") |