diff options
Diffstat (limited to 'gnu/packages/astronomy.scm')
| -rw-r--r-- | gnu/packages/astronomy.scm | 252 |
1 files changed, 238 insertions, 14 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index d88a0ef739..e968fd2480 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -6,7 +6,7 @@ ;;; Copyright © 2020 R Veera Kumar <vkor@vkten.in> ;;; Copyright © 2020, 2021 Guillaume Le Vaillant <glv@posteo.net> ;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> -;;; Copyright © 2021 Vinicius Monego <monego@posteo.net> +;;; Copyright © 2021, 2022 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2021 Greg Hogan <code@greghogan.com> ;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com> ;;; @@ -55,8 +55,10 @@ #:use-module (gnu packages python-check) #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-science) + #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages qt) + #:use-module (gnu packages time) #:use-module (gnu packages version-control) #:use-module (gnu packages video) #:use-module (gnu packages wxwidgets) @@ -188,7 +190,7 @@ for reading and writing.") (define-public erfa (package (name "erfa") - (version "1.7.3") + (version "2.0.0") (source (origin (method git-fetch) @@ -197,7 +199,7 @@ for reading and writing.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0nh12dr7gk4ki55lz95pkm4fpf7kazirra3zax9pab6v4qql4hlw")))) + (base32 "0s9dpj0jdkqcg552f00jhd722czji4pffabmpys5pgi6djckq4f4")))) (build-system gnu-build-system) (native-inputs (list automake autoconf libtool pkg-config)) @@ -612,13 +614,13 @@ accurately in real time at any rate desired.") (define-public python-astropy (package (name "python-astropy") - (version "4.3.1") + (version "5.0") (source (origin (method url-fetch) (uri (pypi-uri "astropy" version)) (sha256 - (base32 "0lfd6n7v7kas4wvacddnwgccax3ks908735dzilg7dsf7ci52f9d")) + (base32 "09rr9z2kn5qw34fqpwxgcwsn9m5aw6f0dd0pm232aa8k3qakw83h")) (modules '((guix build utils))) (snippet '(begin @@ -690,7 +692,12 @@ accurately in real time at any rate desired.") (inputs (list cfitsio expat)) (propagated-inputs - (list python-configobj python-numpy python-ply python-pyerfa)) + (list python-configobj + python-numpy + python-packaging + python-ply + python-pyerfa + python-pyyaml)) (home-page "https://www.astropy.org/") (synopsis "Core package for Astronomy in Python") (description @@ -699,6 +706,226 @@ much of the core functionality and some common tools needed for performing astronomy and astrophysics.") (license license:bsd-3))) +(define-public python-astropy-healpix + (package + (name "python-astropy-healpix") + (version "0.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astropy-healpix" version)) + (sha256 + (base32 "1436ml03xkmvx4afzbhfj67ab91418sz1w3lq1b18r43qchnd6j0")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; This file is opened in both install and check phases. + (add-before 'install 'writable-compiler + (lambda _ (make-file-writable "astropy_healpix/_compiler.c"))) + (add-before 'check 'writable-compiler + (lambda _ (make-file-writable "astropy_healpix/_compiler.c"))) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + ;; Extensions have to be rebuilt before running the tests. + (invoke "python" "setup.py" "build_ext" "--inplace") + (invoke "python" "-m" "pytest" + "--pyargs" "astropy_healpix"))))))) + (native-inputs + (list python-extension-helpers + python-hypothesis + python-pytest-astropy + python-setuptools-scm)) + (propagated-inputs + (list python-astropy python-numpy)) + (home-page "https://github.com/astropy/astropy-healpix") + (synopsis "HEALPix for Astropy") + (description "This package provides HEALPix to the Astropy project.") + (license license:bsd-3))) + +(define-public python-astroquery + (package + (name "python-astroquery") + (version "0.4.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astroquery" version)) + (sha256 + (base32 "06xy0qzqmps6z5vwfkh5fkhr151p7g94r2j0mvp1rc8zns22y010")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'writable-home + (lambda _ ; some tests need a writable home + (setenv "HOME" (getcwd)))) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest" "--pyargs" "astroquery" + ;; Skip tests that require online data. + "-m" "not remote_data"))))))) + (propagated-inputs + (list python-astropy + python-beautifulsoup4 + python-html5lib + python-keyring + python-numpy + python-pyvo + python-requests)) + (native-inputs + (list python-flask + python-jinja2 + python-matplotlib + python-pytest-astropy + python-pytest-dependency)) + (home-page "https://www.astropy.org/astroquery/") + (synopsis "Access online astronomical data resources") + (description "Astroquery is a package that contains a collection of tools +to access online Astronomical data. Each web service has its own sub-package.") + (license license:bsd-3))) + +(define-public python-photutils + (package + (name "python-photutils") + (version "1.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "photutils" version)) + (sha256 + (base32 "1a8djakaya6w5iv9237gkcz39brqzgrfs2wqrl0izi1s85cfdymn")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + ;; This file is opened in both install and check phases. + (add-before 'install 'writable-compiler + (lambda _ (make-file-writable "photutils/_compiler.c"))) + (add-before 'check 'writable-compiler + (lambda _ (make-file-writable "photutils/_compiler.c")))))) + (propagated-inputs + (list python-astropy python-numpy)) + (native-inputs + (list python-cython + python-extension-helpers + python-pytest-astropy + python-pytest-runner + python-setuptools-scm)) + (home-page "https://github.com/astropy/photutils") + (synopsis "Source detection and photometry") + (description "Photutils is an Astropy package for detection and photometry +of astronomical sources.") + (license license:bsd-3))) + +(define-public python-pyvo + (package + (name "python-pyvo") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyvo" version)) + (sha256 + (base32 "1lap703wxbyxqlbk85myirp4pkdnc6cg10xhfajfsvz5k0hm5ffw")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest" "--pyargs" "pyvo" "-k" + (string-append ; these tests use the network + "not test_access_with_string" + " and not test_access_with_list" + " and not test_access_with_expansion")))))))) + (native-inputs + (list python-pytest-astropy python-requests-mock)) + (propagated-inputs + (list python-astropy python-mimeparse python-pillow python-requests)) + (home-page "https://github.com/astropy/pyvo") + (synopsis "Access Virtual Observatory data and services") + (description + "PyVO is a package providing access to remote data and services of the +Virtual observatory (VO) using Python.") + (license license:bsd-3))) + +(define-public python-regions + (package + (name "python-regions") + (version "0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "regions" version)) + (sha256 + (base32 "1bjrcjchbw3xw1a26d5g198lh7vxpp9m5sal58r7f8mmr1d8g2dc")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + ;; This doctest requires online data. + (add-after 'unpack 'delete-doctest + (lambda _ (delete-file "docs/masks.rst"))) + ;; This file is opened in both install and check phases. + (add-before 'install 'writable-compiler + (lambda _ (make-file-writable "regions/_compiler.c"))) + (add-before 'check 'writable-compiler + (lambda _ (make-file-writable "regions/_compiler.c"))) + (add-before 'check 'writable-home + (lambda _ (setenv "HOME" (getcwd))))))) + (propagated-inputs + (list python-astropy python-numpy)) + (native-inputs + (list python-cython + python-extension-helpers + python-pytest-arraydiff + python-pytest-astropy + python-pytest-runner + python-setuptools-scm)) + (home-page "https://github.com/astropy/regions") + (synopsis "Package for region handling") + (description "Regions is an Astropy package for region handling.") + (license license:bsd-3))) + +(define-public python-astral + (package + (name "python-astral") + (version "2.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astral" version)) + (sha256 + (base32 "1gkggdibccmdy9glymw3kbrkzm6svvsg0lk56hhy92y4smkrj7g4")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest"))))))) + (native-inputs + (list python-freezegun python-setuptools-scm)) + (propagated-inputs + (list python-dataclasses python-pytest python-pytz)) + (home-page "https://github.com/sffjunkie/astral") + (synopsis "Calculations for the position of the sun and moon") + (description "Astral is a Python module that calculates times for various +positions of the sun: dawn, sunrise, solar noon, sunset, dusk, solar +elevation, solar azimuth, rahukaalam, and the phases of the moon.") + (license license:asl2.0))) + (define-public libnova (package (name "libnova") @@ -1170,13 +1397,13 @@ JPL ephemerides use to predict raw (x,y,z) planetary positions.") (define-public python-pyerfa (package (name "python-pyerfa") - (version "1.7.3") + (version "2.0.0.1") (source (origin (method url-fetch) (uri (pypi-uri "pyerfa" version)) (sha256 - (base32 "1jqqrxvrgly4r0br5f6dsy8nab2xmhz915vp6md5f31ysr2sdwvc")) + (base32 "0c6y1rm51kj8ahbr1vwbswck3ix77dc3zhc2fkg6w7iczrzn7m1g")) (modules '((guix build utils))) (snippet '(begin @@ -1189,14 +1416,11 @@ JPL ephemerides use to predict raw (x,y,z) planetary positions.") (modify-phases %standard-phases (add-before 'build 'use-system-liberfa (lambda _ - (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1") - #t))))) + (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1")))))) (native-inputs - `(("pytest-doctestplus" ,python-pytest-doctestplus) - ("python-pytest" ,python-pytest) - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-pytest-doctestplus python-pytest python-setuptools-scm)) (inputs - `(("liberfa" ,erfa))) + (list erfa)) (propagated-inputs (list python-numpy)) (home-page "https://github.com/liberfa/pyerfa") |