diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index aafbc7a828..8554228c0e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -16289,6 +16289,37 @@ type and symbol colors.") position-specific scores within R and Bioconductor.") (license license:artistic2.0))) +(define-public r-genomicstate + (package + (name "r-genomicstate") + (version "0.99.15") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "GenomicState" version + 'annotation)) + (sha256 + (base32 "1r7z3n6wyrd2cclj5b7sg15wpmjdh9k5b1hjlw7jjx8j384l7l1h")))) + (properties `((upstream-name . "GenomicState"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-annotationhub + r-bumphunter + r-derfinder + r-genomeinfodb + r-genomicfeatures + r-iranges + r-org-hs-eg-db + r-rtracklayer)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/LieberInstitute/GenomicState") + (synopsis "Build and access GenomicState objects") + (description + "This package contains functions for building @code{GenomicState} objects +from different annotation sources such as Gencode. It also provides access to +these files at JHPCE.") + (license license:artistic2.0))) + (define-public r-atacseqqc (package (name "r-atacseqqc") |