diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 20 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7861987704..448ea5d6de 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -96,6 +96,7 @@ #:use-module (gnu packages golang-build) #:use-module (gnu packages golang-check) #:use-module (gnu packages golang-compression) + #:use-module (gnu packages golang-xyz) #:use-module (gnu packages glib) #:use-module (gnu packages graph) #:use-module (gnu packages graphics) @@ -4615,7 +4616,7 @@ interval trees with associated meta-data. It is primarily used by the (define-public python-deeptools (package (name "python-deeptools") - (version "3.4.3") + (version "3.5.5") (source (origin (method git-fetch) (uri (git-reference @@ -4624,8 +4625,23 @@ interval trees with associated meta-data. It is primarily used by the (file-name (git-file-name name version)) (sha256 (base32 - "0l09vyynz6s6w7fnyd94rpys4a6aja6kp4gli64pngdxdz3md1nl")))) - (build-system python-build-system) + "0mgcs03amrd5157drbm6ikdg0m0szrn9xbflariz2zrrnqpsai6s")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'fix-test + (lambda _ + (substitute* "deeptools/test/test_tools.py" + (("e_ver = _p") + "e_ver = \".\" + _p + \"-real\"")) + (substitute* "deeptools/multiBigwigSummary.py" + (("version='multiBigwigSummary") + "version='%(prog)s")) + (substitute* "deeptools/plotCoverage.py" + (("version='plotCoverage") + "version='%(prog)s"))))))) (native-inputs (list python-mock python-nose)) (propagated-inputs @@ -4637,7 +4653,7 @@ interval trees with associated meta-data. It is primarily used by the python-pysam python-scipy python-deeptoolsintervals - python-plotly-2.4.1)) + python-plotly)) (home-page "https://pypi.org/project/deepTools/") (synopsis "Useful tools for exploring deep sequencing data") (description "This package addresses the challenge of handling large amounts |