diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 147 |
1 files changed, 98 insertions, 49 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8207f09725..4fe257e6c1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -279,13 +279,13 @@ files and provide more explicit control over line endings.") (define-public r-broom-helpers (package (name "r-broom-helpers") - (version "1.14.0") + (version "1.15.0") (source (origin (method url-fetch) (uri (cran-uri "broom.helpers" version)) (sha256 - (base32 "14vaqxv12yrvqllp8552nx68wk2qfjcy1iy7bajkspgdpwsjzhfd")))) + (base32 "0gm9k2d73p6bhcmzc43qgy6v27pi036369dldz77hd5h5i95hp7c")))) (properties `((upstream-name . "broom.helpers"))) (build-system r-build-system) (propagated-inputs (list r-broom @@ -1083,13 +1083,13 @@ samples) are easily visualized.") (define-public r-ggstats (package (name "r-ggstats") - (version "0.5.1") + (version "0.6.0") (source (origin (method url-fetch) (uri (cran-uri "ggstats" version)) (sha256 - (base32 "1jcydapwarl1cxinm80rjmmli8vmlid8alnh6w484bh7nwzmcsic")))) + (base32 "103d1d4azdiaf5i2dgr23wrx6svc0aq85axrfj0v2b2lkwial2pq")))) (properties `((upstream-name . "ggstats"))) (build-system r-build-system) (propagated-inputs (list r-broom-helpers @@ -1117,13 +1117,13 @@ plots.") (define-public r-ggstatsplot (package (name "r-ggstatsplot") - (version "0.12.2") + (version "0.12.3") (source (origin (method url-fetch) (uri (cran-uri "ggstatsplot" version)) (sha256 (base32 - "0nriqsfk48ijkkg06i87zp2frp7yz3c4gfmfgfig6v8mcmj19zwr")))) + "0lm48b664nin8f32a3xpqvc95cizi27sls5m4vrymfz3aarcwrxr")))) (properties `((upstream-name . "ggstatsplot"))) (build-system r-build-system) (propagated-inputs (list r-correlation @@ -1792,14 +1792,14 @@ bioinformaticians to assemble complex plots for publication.") (define-public r-rticles (package (name "r-rticles") - (version "0.26") + (version "0.27") (source (origin (method url-fetch) (uri (cran-uri "rticles" version)) (sha256 (base32 - "0v1sji223iifqmq9hakr1wcgzfca52nvmh3vbi6s6d309qc77vkk")))) + "1a5i8vzcf058dqk30yir3ngs02f17s4d0b0px31pxa0d1ak1yfh7")))) (properties `((upstream-name . "rticles"))) (build-system r-build-system) (propagated-inputs @@ -3996,13 +3996,13 @@ scraping tasks, inspired by libraries like @code{BeautifulSoup}.") (define-public r-secretbase (package (name "r-secretbase") - (version "0.3.0.1") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "secretbase" version)) (sha256 - (base32 "0mhfkkl35g10lgz4llm017f2jbgp7vmgi0g301r4agx1iqj5g51w")))) + (base32 "0b05js4vh6pkkiqms2qmipy5pq96q1i5grb951skk0h953cmwf11")))) (properties `((upstream-name . "secretbase"))) (build-system r-build-system) (home-page "https://shikokuchuo.net/secretbase/") @@ -4625,13 +4625,13 @@ a list of p-values.") (define-public r-htmltools (package (name "r-htmltools") - (version "0.5.8") + (version "0.5.8.1") (source (origin (method url-fetch) (uri (cran-uri "htmltools" version)) (sha256 (base32 - "15g6ygpz9qfbf2ihapm5vyh8jwddhba6yikgvnara2wdrqcfp71n")))) + "0xpi2g87vwanp0kbs22j90pa2bban3nwrdjdb3257hq6xj9j5xpr")))) (build-system r-build-system) (propagated-inputs (list r-base64enc r-digest r-fastmap r-rlang)) @@ -6619,6 +6619,30 @@ attaching it. This is a key part of the @code{devtools} package as it allows you to rapidly iterate while developing a package.") (license license:gpl3))) +(define-public r-pki + (package + (name "r-pki") + (version "0.1-12") + (source + (origin + (method url-fetch) + (uri (cran-uri "PKI" version)) + (sha256 + (base32 "0nidg6l9nrmpyimi502fydy22r247w9i4ngb2xdbxjvfhr17m0xd")))) + (properties `((upstream-name . "PKI"))) + (build-system r-build-system) + (inputs (list openssl zlib)) + (propagated-inputs (list r-base64enc)) + (native-inputs (list pkg-config)) + (home-page "http://www.rforge.net/PKI") + (synopsis "Public Key Infrastucture for R based on the X.509 standard") + (description + "This is a package containing Public Key Infrastucture functions such as +verifying certificates, RSA encryption and signing, which can be used to build +PKI infrastructure and perform cryptographic tasks.") + ;; Either of these licenses. + (license (list license:gpl2 license:gpl3)))) + (define-public r-pvclust (package (name "r-pvclust") @@ -6637,7 +6661,7 @@ you to rapidly iterate while developing a package.") resampling for assessing the uncertainty in hierarchical cluster analysis. It provides an AU (approximately unbiased) P-value as well as a BP (bootstrap probability) value for each cluster in a dendrogram.") - (license license:gpl2+))) + (license license:gpl2+))) (define-public r-rcpp (package @@ -9683,6 +9707,27 @@ can be produced. All the probability functions in the stats, stats4 and evd packages are automatically available for truncation.") (license license:gpl2+))) +(define-public r-trycatchlog + (package + (name "r-trycatchlog") + (version "1.3.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "tryCatchLog" version)) + (sha256 + (base32 "0k40a48qzwmardjnkf0h5s5zryivzvdanz61kxdqdfqlil19ma0d")))) + (properties `((upstream-name . "tryCatchLog"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://github.com/aryoda/tryCatchLog") + (synopsis "Advanced tryCatch and try functions") + (description + "This package provides advanced @code{tryCatch} and @code{try} functions +for better error handling (logging, stack trace with source code references +and support for post-mortem analysis via dump files).") + (license license:gpl3))) + (define-public r-rsolnp (package (name "r-rsolnp") @@ -9709,18 +9754,19 @@ programming} (SQP) based solver).") (define-public r-hardyweinberg (package (name "r-hardyweinberg") - (version "1.7.7") + (version "1.7.8") (source (origin (method url-fetch) (uri (cran-uri "HardyWeinberg" version)) (sha256 (base32 - "058bfb43i2vjrc2iy3q3izlijw2hh61rl47c9gcf327xlp9x6wnh")))) + "1wddy32zljyya37isqb54sqhpp07s2kizjl36i08pj37bbza7yac")))) (properties `((upstream-name . "HardyWeinberg"))) (build-system r-build-system) (propagated-inputs (list r-mice r-nnet r-rcpp r-rsolnp r-shape)) + (native-inputs (list r-knitr r-rmarkdown)) (home-page "https://cran.r-project.org/package=HardyWeinberg") (synopsis "Statistical tests and graphics for Hardy-Weinberg equilibrium") (description @@ -10245,14 +10291,14 @@ rules, boxes, trees, and Unicode symbols with ASCII alternatives.") (define-public r-argparser (package (name "r-argparser") - (version "0.7.1") + (version "0.7.2") (source (origin (method url-fetch) (uri (cran-uri "argparser" version)) (sha256 (base32 - "0xcl0ivsbc4iw8s7027q4cx68j6s5lihbby0xa9pmlv4wjmcvdr6")))) + "0j9hnbyzbyzclgm4qwyqqkrqcrblxfm190489sgcvr5i7vg2smr8")))) (build-system r-build-system) (home-page "https://bitbucket.org/djhshih/argparser") (synopsis "Command-line argument parser") @@ -12578,14 +12624,14 @@ regression and information measures are implemented.") (define-public r-smoother (package (name "r-smoother") - (version "1.1") + (version "1.3") (source (origin (method url-fetch) (uri (cran-uri "smoother" version)) (sha256 (base32 - "0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci")))) + "0xw28qv8f5i05ajx32njnql6hql5njqyc47wcq6c75cxiv44ppz8")))) (build-system r-build-system) (propagated-inputs (list r-ttr)) @@ -13074,14 +13120,14 @@ time after the current time, after the R execution stack has emptied.") (define-public r-promises (package (name "r-promises") - (version "1.2.1") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "promises" version)) (sha256 (base32 - "1gp55inqbbj0ifm4n0j5h8854a9v109xpikyhwv7b8lyydns5q1w")))) + "1lzs65csxaq26d1g37qjjgxzm418xv52c3ccpk0l0cxkpbrrs87q")))) (build-system r-build-system) (propagated-inputs (list r-fastmap @@ -15612,13 +15658,13 @@ and coverage methods to tune the choice of threshold.") (define-public r-ggstance (package (name "r-ggstance") - (version "0.3.6") + (version "0.3.7") (source (origin (method url-fetch) (uri (cran-uri "ggstance" version)) (sha256 - (base32 "0wk3gbi5365sndi02gwd4c33vcrj5p8cfwakwjg010y5hgxx96nd")))) + (base32 "0v25si348qdp68887yx4d652rsz8w5lfabwaq1nvglrhs6s4f9js")))) (build-system r-build-system) (propagated-inputs (list r-cli r-ggplot2 r-plyr r-rlang r-withr)) @@ -17186,14 +17232,14 @@ the differences were not significantly different.") (define-public r-emmeans (package (name "r-emmeans") - (version "1.10.0") + (version "1.10.1") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "1vq7abyirrrpx00d464pgva2i17f3wxx08f4rc23bl331s3lsx23")))) + "175az87aj2zrjsi94vvca612krbhry7yqq6l03ybq31jhj7vc2fa")))) (build-system r-build-system) (propagated-inputs (list r-estimability r-mvtnorm r-numderiv)) @@ -17323,14 +17369,14 @@ Bayesian modeling.") (define-public r-tmb (package (name "r-tmb") - (version "1.9.10") + (version "1.9.11") (source (origin (method url-fetch) (uri (cran-uri "TMB" version)) (sha256 (base32 - "1cc34zxn2x88fbh4clgbzia36800i30pdlywbkwc26zm50nsxpwi")))) + "07z9565rn64k3ysvcgq6s792qg1v102gd9in5ifigm140zc4l45j")))) (properties `((upstream-name . "TMB"))) (build-system r-build-system) (propagated-inputs @@ -22741,14 +22787,14 @@ numbers from ZIP and ZINB distributions.") (define-public r-nor1mix (package (name "r-nor1mix") - (version "1.3-2") + (version "1.3-3") (source (origin (method url-fetch) (uri (cran-uri "nor1mix" version)) (sha256 (base32 - "0252kqhdsp374isc59pm1c6dmsb16jibpnsp1bpyh4k5mg73cdj6")))) + "0vh7vlvijska09rm0cb2lakwhjm38mc4daksc2zniyj7r3wd1gwp")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/nor1mix/") (synopsis "Normal (1-d) mixture models") @@ -26129,14 +26175,14 @@ batch correction, and data correction.") (define-public r-styler (package (name "r-styler") - (version "1.10.2") + (version "1.10.3") (source (origin (method url-fetch) (uri (cran-uri "styler" version)) (sha256 (base32 - "043v9xwm72jqrrzzmjgrkf34lncjnn69650ks72z7rjb1wqmbh56")))) + "0hfspw1q40jqla238dw86iyf0lyk1agc19flwvf9nrm824hw5fdd")))) (build-system r-build-system) ;; This is needed by R.cache. (arguments @@ -26408,14 +26454,14 @@ classification and regression models.") (define-public r-dae (package (name "r-dae") - (version "3.2.21") + (version "3.2.25") (source (origin (method url-fetch) (uri (cran-uri "dae" version)) (sha256 (base32 - "0j47d4r4mpkfaz29h7iiijmzi7fj7nysg8pd9c79h160h1lww9yx")))) + "168kisjgfc8cp7j6frgpci7qxw548rynpi9wv008k8hfszkfkgny")))) (build-system r-build-system) (arguments '(#:phases @@ -26424,7 +26470,7 @@ classification and regression models.") ;; Needed for vignette builder (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs - (list r-ggplot2 r-ggpubr r-plyr)) + (list r-ggplot2 r-ggpubr r-plyr r-trycatchlog)) (native-inputs (list r-r-rsp)) ; vignette builder (home-page "http://chris.brien.name") @@ -31603,19 +31649,20 @@ programming} (OOP) using R Reference Class.") (define-public r-proxyc (package (name "r-proxyc") - (version "0.3.4") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "proxyC" version)) (sha256 (base32 - "1skq5cxd0kh2pccfg4h9bis4wbqb6zm04q4iwfa6dqml6hyiv7gk")))) + "1a124nzxldc6687kvgkg41dqfbqb7yqdgm9dj5fj8g4bax9qcgg8")))) (properties `((upstream-name . "proxyC"))) (build-system r-build-system) (native-inputs (list r-knitr)) + (inputs (list tbb)) (propagated-inputs - (list r-matrix r-rcpp r-rcpparmadillo r-rcppparallel)) + (list r-matrix r-rcpp r-rcpparmadillo)) (home-page "https://cran.r-project.org/package=proxyC") (synopsis "Compute proximity in large sparse matrices") (description @@ -31720,31 +31767,32 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") (define-public r-quanteda (package (name "r-quanteda") - (version "3.3.1") + (version "4.0.1") (source (origin (method url-fetch) (uri (cran-uri "quanteda" version)) (sha256 (base32 - "0rj13m0fmk0h9akmqwwp7nkwrvym7sj97jgvjr4mvi3sglq451b2")))) + "0m0iw7vm9v7dcrh9yd56kr0vagas1czqgbn2ybyxg86nwcrl73qq")))) (properties `((upstream-name . "quanteda"))) (build-system r-build-system) (propagated-inputs (list r-fastmatch r-jsonlite + r-lifecycle r-magrittr r-matrix r-rcpp r-rcpparmadillo - r-rcppparallel r-snowballc r-stopwords r-stringi r-xml2 r-yaml)) + (inputs (list tbb)) (native-inputs - (list r-knitr)) + (list pkg-config r-knitr)) (home-page "https://quanteda.io") (synopsis "Quantitative analysis of textual data") (description @@ -32633,14 +32681,14 @@ and reproducible way.") (define-public r-rsconnect (package (name "r-rsconnect") - (version "1.2.1") + (version "1.2.2") (source (origin (method url-fetch) (uri (cran-uri "rsconnect" version)) (sha256 (base32 - "0snfzr2xf91630hd2w1q9yy09vlfdy4dzb9gc8g14nq9hh34h999")))) + "19n0j7g2yy45qp5zgs5lz1cm1d7p6d0h8bwqcsfp9mnr2zzc0yr5")))) (properties `((upstream-name . "rsconnect"))) (build-system r-build-system) (propagated-inputs @@ -32651,6 +32699,7 @@ and reproducible way.") r-lifecycle r-openssl r-packrat + r-pki r-renv r-rlang r-rstudioapi @@ -34025,14 +34074,14 @@ multi-state models.") (define-public r-scatterpie (package (name "r-scatterpie") - (version "0.2.1") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "scatterpie" version)) (sha256 (base32 - "0wfrckyvy4zw34qdvgg1gwqfdi1xhs63v3gfwa4akm7ifd1canlb")))) + "1q36g6rqggrysnjqarxbyjw3y3z244k0zh1a49w6j4149k8qc462")))) (properties `((upstream-name . "scatterpie"))) (build-system r-build-system) (propagated-inputs @@ -38903,14 +38952,14 @@ light-weight geometry library used by @url{http://postgis.net/,PostGIS}.") (define-public r-stars (package (name "r-stars") - (version "0.6-4") + (version "0.6-5") (source (origin (method url-fetch) (uri (cran-uri "stars" version)) (sha256 (base32 - "0mqd2dfa8jhxjmfphvv3rkw2lri5sz49042asj5lyln3wkylqjj2")))) + "1b5gs0qa8097f2mvz4rgl46wrvk1rbbbi2a4s901hdg4bkr15jsg")))) (properties `((upstream-name . "stars"))) (build-system r-build-system) (propagated-inputs @@ -39091,14 +39140,14 @@ BTM-WWW13.pdf}.") (define-public r-delaporte (package (name "r-delaporte") - (version "8.3.0") + (version "8.4.0") (source (origin (method url-fetch) (uri (cran-uri "Delaporte" version)) (sha256 (base32 - "1g499xrb3hhd9xrzbxm1d911hm06mfn119xxmcr6f47vsz15ksvy")))) + "1jqz2qxig35rhmwvazmsl3a081dylfq2jfz3bjpj61y4c55mnwar")))) (properties `((upstream-name . "Delaporte"))) (build-system r-build-system) (native-inputs (list gfortran)) |