diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 186 |
1 files changed, 123 insertions, 63 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1be553149c..07ce0824cb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1409,14 +1409,14 @@ similar rank-based tests for equal probability distributions due to Neuhauser (define-public r-v8 (package (name "r-v8") - (version "4.2.2") + (version "4.3.0") (source (origin (method url-fetch) (uri (cran-uri "V8" version)) (sha256 (base32 - "0friwpw3cbg40hfsqnlp8g3a6l4zhfag6lh005ya6dw634kkarah")))) + "1l70vdqcagp9cdyxa231gk33z5blsg96j0l28zbaklnhmr7mqfby")))) (properties `((upstream-name . "V8"))) (build-system r-build-system) (arguments @@ -1712,13 +1712,13 @@ proposals for count data.") (define-public r-zoo (package (name "r-zoo") - (version "1.8-11") + (version "1.8-12") (source (origin (method url-fetch) (uri (cran-uri "zoo" version)) (sha256 (base32 - "19cw09bhwj2qyd72765ym1cm2wmhh801ccif889nzq5gfpw513l4")))) + "1f1g7f362sidh99n2pcgnj8iwsn7hnjgpdnkrqml5qzrd0k8dhz6")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) @@ -5186,13 +5186,13 @@ initiative to bring PASSTEC 2000 functionalities to R.") (define-public r-partykit (package (name "r-partykit") - (version "1.2-19") + (version "1.2-20") (source (origin (method url-fetch) (uri (cran-uri "partykit" version)) (sha256 (base32 - "0ma3haanf5pkj8r8q3bd0ig3zq9ppfjhhfkh6v50m82z6fprm3p4")))) + "1np0sa7fx7wvwxbpk5lpgbdpz0xwcvppq0sc52nifx1dxnirll33")))) (build-system r-build-system) (propagated-inputs (list r-formula @@ -6698,6 +6698,41 @@ functions from LINPACK.") ;; Any GPL version. (license (list license:gpl2+ license:gpl3+)))) +(define-public r-littler + (package + (name "r-littler") + (version "0.3.18") + (source (origin + (method url-fetch) + (uri (cran-uri "littler" version)) + (sha256 + (base32 + "1lp6a62g3yhzr4pv9kynibv7k9pd546w6hifs1aficyxbyg4dgqq")))) + (properties `((upstream-name . "littler"))) + (build-system r-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'install 'install-executable + (lambda _ + (install-file "inst/bin/r" + (string-append #$output "/bin"))))))) + (inputs (list icu4c zlib)) + (native-inputs + (list r-simplermarkdown pkg-config)) + (home-page "https://github.com/eddelbuettel/littler") + (synopsis "R at the command-line via r") + (description + "This package provides a scripting and command-line front-end is provided +by r (aka littler) as a lightweight binary wrapper around the GNU R language +and environment for statistical computing and graphics. While R can be used +in batch mode, the r binary adds full support for both shebang-style scripting +(i.e. using a hash-mark-exclamation-path expression as the first line in +scripts) as well as command-line use in standard pipelines. In other words, r +provides the R language without the environment.") + (license license:gpl2+))) + (define-public r-fitdistrplus (package (name "r-fitdistrplus") @@ -7801,14 +7836,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.") (define-public r-jomo (package (name "r-jomo") - (version "2.7-5") + (version "2.7-6") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "05xfkj65nqd987pp5bhl4jy46qxwjll5mxnjii6qrmfmjld177q5")))) + "1np2sw0kq21kdhkv227pz2rqvpxg06r3mk93ggkrz5nl45ajmyiz")))) (build-system r-build-system) (propagated-inputs (list r-lme4 r-mass r-ordinal r-survival r-tibble)) @@ -9499,17 +9534,17 @@ Fisher's method), and Sidak correction.") (define-public r-quantmod (package (name "r-quantmod") - (version "0.4.21") + (version "0.4.22") (source (origin (method url-fetch) (uri (cran-uri "quantmod" version)) (sha256 (base32 - "1qmpdk91smiqg63h4jsrw4izl4pnbgwlzi16zjvin0fs29kx01jf")))) + "0pknwssha01hjsf3c7lgrabk2c3rzq5wa2m7mf8sz7wsrbqrd57j")))) (build-system r-build-system) (propagated-inputs - (list r-curl r-ttr r-xts r-zoo)) + (list r-curl r-jsonlite r-ttr r-xts r-zoo)) (home-page "https://cran.r-project.org/web/packages/quantmod/") (synopsis "Quantitative financial modelling framework") (description "This package provides a quantitative financial modelling @@ -11401,14 +11436,14 @@ those searches and pull data into their R sessions.") (define-public r-renv (package (name "r-renv") - (version "0.17.2") + (version "0.17.3") (source (origin (method url-fetch) (uri (cran-uri "renv" version)) (sha256 (base32 - "1qar7s3zdnhqsi6am6f58wg3ygpwv73qmrcp36glz0galzigc0y2")))) + "1w7mwk3drf3bzfyhsy6mlnpbhgp8il8is7q95ad567ry4g6jhkqw")))) (properties `((upstream-name . "renv"))) (build-system r-build-system) (native-inputs @@ -12635,6 +12670,29 @@ documents.") libxlsxwriter.") (license license:bsd-2))) +(define-public r-writexls + (package + (name "r-writexls") + (version "6.4.0") + (source (origin + (method url-fetch) + (uri (cran-uri "WriteXLS" version)) + (sha256 + (base32 + "1dqr98kx930y6mcvb9b39xiwshhs250gkd2vw2v6iil34sl90jv4")))) + (properties `((upstream-name . "WriteXLS"))) + (build-system r-build-system) + (inputs (list perl)) + (home-page "https://github.com/marcschwartz/WriteXLS") + (synopsis "Create Excel 2003 (XLS) and Excel 2007 (XLSX) files") + (description + "This package provides a cross-platform Perl-based R function to create +Excel 2003 (XLS) and Excel 2007 (XLSX) files from one or more data frames. +Each data frame will be written to a separate named worksheet in the Excel +spreadsheet. The worksheet name will be the name of the data frame it +contains or can be specified by the user.") + (license license:gpl2+))) + (define-public r-biasedurn (package (name "r-biasedurn") @@ -13657,14 +13715,14 @@ subsequence} (LCS) using a dynamic programming algorithm.") (define-public r-labelled (package (name "r-labelled") - (version "2.10.0") + (version "2.11.0") (source (origin (method url-fetch) (uri (cran-uri "labelled" version)) (sha256 (base32 - "02n4r4bizsysnlmxpw86w7zkiqi6aill9dq2nmrn43xzrffy54sy")))) + "1pg5l2c3ai8gkrqryq5xzsal85pljmdzc2ln8k1ak3j4racm5p7d")))) (properties `((upstream-name . "labelled"))) (build-system r-build-system) (propagated-inputs @@ -13688,13 +13746,13 @@ haven package.") (define-public r-ggformula (package (name "r-ggformula") - (version "0.10.2") + (version "0.10.4") (source (origin (method url-fetch) (uri (cran-uri "ggformula" version)) (sha256 - (base32 "0xb39gjn6q7va1d1fhvf2dw9428s1q13wasx4y3cz2f0lls1r2wl")))) + (base32 "07d9sq0dqi0g5x9h58icfk1f4hgg1xz4mhbp2z2rxg9qgs74fvdj")))) (build-system r-build-system) (propagated-inputs (list r-ggforce @@ -14871,13 +14929,13 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-multcompview (package (name "r-multcompview") - (version "0.1-8") + (version "0.1-9") (source (origin (method url-fetch) (uri (cran-uri "multcompView" version)) (sha256 - (base32 "1rfq9wvvrghq0542ff40wy8vdmsyd8spzz6ihcywcvxdfa8m6g8j")))) + (base32 "15vki166n2k4ng72hy62c2mzz18s10h6l6w839qplg0zsplr6f8z")))) (properties `((upstream-name . "multcompView"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=multcompView") @@ -15125,14 +15183,14 @@ differentiation.") (define-public r-bayestestr (package (name "r-bayestestr") - (version "0.13.0") + (version "0.13.1") (source (origin (method url-fetch) (uri (cran-uri "bayestestR" version)) (sha256 (base32 - "1951zm88qlbmr4ragrzfzgw72awm7mqhh464s6kck0mcx7shas90")))) + "0mmnifi3j29qlsj917wbdqpgpk05x3cc7111k842gsv7y34h4ir7")))) (properties `((upstream-name . "bayestestR"))) (build-system r-build-system) (propagated-inputs @@ -15152,14 +15210,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.10.2") + (version "0.10.3") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "0r9x5pqf1asf0sy0255jv0d4cki4xd5sfp5rl9mldclykpswf022")))) + "1l4sr6cgg8rkgs5w98a36n79b1lbg241p60grsnz12hskppa1a6q")))) (build-system r-build-system) (propagated-inputs (list r-bayestestr r-datawizard r-insight)) @@ -18014,14 +18072,14 @@ and manipulating sets of ontological terms.") (define-public r-gargle (package (name "r-gargle") - (version "1.3.0") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "gargle" version)) (sha256 (base32 - "02ldshm8phs1ls0djqfprv5yy8i50ijh16y7smkb61wrwd4zr3s2")))) + "12s980jfw98czzrxdn83b2blj4qcrkqqmycjplkzvm4mapgiw3wf")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -18033,7 +18091,6 @@ and manipulating sets of ontological terms.") r-openssl r-rappdirs r-rlang - r-rstudioapi r-withr)) (native-inputs (list r-knitr)) @@ -19771,14 +19828,14 @@ users of rARPACK are advised to switch to the RSpectra package.") (define-public r-compositions (package (name "r-compositions") - (version "2.0-5") + (version "2.0-6") (source (origin (method url-fetch) (uri (cran-uri "compositions" version)) (sha256 (base32 - "0niccv8i3jrcjnjm7dygzhz6bfah9za6lswa669pfpgsycilpf51")))) + "0d0wlrwfpjvz02cwrqpg5bnrf8isz359dl9qqxn9yb6czpmp9ls5")))) (build-system r-build-system) (propagated-inputs (list r-bayesm r-mass r-robustbase r-tensora)) @@ -21249,13 +21306,13 @@ lspec, polyclass, and polymars.") (define-public r-rms (package (name "r-rms") - (version "6.5-0") + (version "6.6-0") (source (origin (method url-fetch) (uri (cran-uri "rms" version)) (sha256 - (base32 "11dibpjgbhlqzn97254hlp6p6wfld7bnw4j5rr0dqwynj6fq2vzx")))) + (base32 "0p32nqb4pj8dddi4dwjbr59wp6q6vvmarq97vpdaxwrr8fwsvazk")))) (build-system r-build-system) (propagated-inputs (list r-cluster @@ -21265,7 +21322,8 @@ lspec, polyclass, and polymars.") r-hmisc r-htmltable r-htmltools - r-lattice + r-kableextra + r-knitr r-mass r-multcomp r-nlme @@ -23474,13 +23532,13 @@ the graph, and propagating graph labels.") (define-public r-scs (package (name "r-scs") - (version "3.0-1") + (version "3.2.4") (source (origin (method url-fetch) (uri (cran-uri "scs" version)) (sha256 (base32 - "04srf33zw4dxv22b1h5qwjch5yg7hrvk4iq8yvxqnbr8qzp1x26n")))) + "13r944b9ip078hqwdpzn3jv21zm47d9l2b1f5y6glcj5pxs9iwy3")))) (properties `((upstream-name . "scs"))) (build-system r-build-system) (home-page "https://github.com/FlorianSchwendinger/scs") @@ -23878,18 +23936,18 @@ and model output.") (define-public r-enrichr (package (name "r-enrichr") - (version "3.1") + (version "3.2") (source (origin (method url-fetch) (uri (cran-uri "enrichR" version)) (sha256 (base32 - "0ad7jp398prvmm2fym07268qhv40mg67dx55ml4ayqkwxwffr1i9")))) + "1g97q6vqwvb2l02y61343sblarqi433gjl3qmlyxjxq2lnjrnak1")))) (properties `((upstream-name . "enrichR"))) (build-system r-build-system) (propagated-inputs - (list r-curl r-ggplot2 r-httr r-rjson)) + (list r-curl r-ggplot2 r-httr r-rjson r-writexls)) (native-inputs (list r-knitr)) (home-page "https://cran.r-project.org/web/packages/enrichR/") @@ -24808,14 +24866,14 @@ emphasize hidden group structures in networks or focus on specific nodes.") (define-public r-terra (package (name "r-terra") - (version "1.7-18") + (version "1.7-23") (source (origin (method url-fetch) (uri (cran-uri "terra" version)) (sha256 (base32 - "0ipavj170yzp88dvbka6a0y683qn78dj7chr1ym1ghncrqkmk0fn")))) + "1xri4cxvkpdyxvm1cv6dypyv0ww9al99vmrhzhscvwj7xycckabg")))) (properties `((upstream-name . "terra"))) (build-system r-build-system) (inputs @@ -27789,13 +27847,13 @@ Visualizations are also available for most of these settings.") (define-public r-torch (package (name "r-torch") - (version "0.9.1") + (version "0.10.0") (source (origin (method url-fetch) (uri (cran-uri "torch" version)) (sha256 - (base32 "03qbdws6j5v2vmdgdnwfd0248s2qirnxpm9v4302vqlq3c0i83c2")))) + (base32 "1ydazl7v10vm69573y871rq1dvbgdvlvhcs6di7xw7i4z4kg2gxm")))) (properties `((upstream-name . "torch"))) (build-system r-build-system) (arguments @@ -27826,6 +27884,7 @@ Visualizations are also available for most of these settings.") r-callr r-cli r-coro + r-desc r-ellipsis r-glue r-magrittr @@ -28220,13 +28279,13 @@ finding peaks in spectra, converting humidity measures.") (define-public r-qqconf (package (name "r-qqconf") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "qqconf" version)) (sha256 (base32 - "1vvw79l8nqpqvmfpff5khgdjbs1s2q5ylg72lvkihd2qfk0d8cf5")))) + "18wfvljd6gbf9am3hh14fgp06gpa04vw9nhl7q07li7rmlkxc1cl")))) (properties `((upstream-name . "qqconf"))) (build-system r-build-system) (inputs (list fftw)) @@ -28980,18 +29039,19 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") (define-public r-quanteda (package (name "r-quanteda") - (version "3.2.4") + (version "3.3.0") (source (origin (method url-fetch) (uri (cran-uri "quanteda" version)) (sha256 (base32 - "1yg3lgckh6fncmw037p4gaa2bab59yh6izqix1cgyysjg4jpcw62")))) + "19b36r1fd493mfcjp58fd986kgyhd2q396il8gb1cpa5cfpny983")))) (properties `((upstream-name . "quanteda"))) (build-system r-build-system) (propagated-inputs (list r-fastmatch + r-jsonlite r-magrittr r-matrix r-rcpp @@ -30097,14 +30157,14 @@ need to derive the partial derivatives.") (define-public r-rstanarm (package (name "r-rstanarm") - (version "2.21.3") + (version "2.21.4") (source (origin (method url-fetch) (uri (cran-uri "rstanarm" version)) (sha256 (base32 - "19rj396q84maxnd9d2xcd5rblg3310xn7sqbd6k18kwf3dvd7wp9")))) + "11diz486ak31zx5402kra3s6nd76cvnla8frfn0kc7dzwhiwcspc")))) (properties `((upstream-name . "rstanarm"))) (build-system r-build-system) (inputs @@ -32062,14 +32122,14 @@ user-level code from spatstat, except for the code for linear networks.") (define-public r-spatstat-linnet (package (name "r-spatstat-linnet") - (version "3.0-6") + (version "3.1-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.linnet" version)) (sha256 (base32 - "0sk0zg4fhy3pryi06i0lvhkrgh47r3h4jxw231i8n5mzng1x828n")))) + "037hggsd9wmiwlxc8wjabzsiqlk5gf6mflm87pps370nmxkavc5r")))) (properties `((upstream-name . "spatstat.linnet"))) (build-system r-build-system) @@ -32872,13 +32932,13 @@ value.") (define-public r-confintr (package (name "r-confintr") - (version "0.2.0") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "confintr" version)) (sha256 (base32 - "1zpprv5ysmnqn83xdsixsm6jhsi1gck32z6x60gp0y8xs25mwcbg")))) + "15vsdbqj5w4qbk7kwp1jqyc3phmmy8s981xjj0n0yy48xhy37f8g")))) (properties `((upstream-name . "confintr"))) (build-system r-build-system) (propagated-inputs (list r-boot)) @@ -32978,21 +33038,21 @@ model.") (define-public r-igraph (package (name "r-igraph") - (version "1.4.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (cran-uri "igraph" version)) (sha256 (base32 - "1waxa15ng4lqr07s68br81ihdnxy5dnx8iygyzkwnyz8dbs5i8h8")))) + "1raaih254dcd19d4sqmb8w8ih5plbvik11nsr9q68nm2n6nh0lvx")))) (build-system r-build-system) (native-inputs (list gfortran r-knitr)) (inputs (list gmp glpk libxml2 zlib)) (propagated-inputs - (list r-magrittr r-matrix r-pkgconfig r-rlang)) + (list r-cpp11 r-magrittr r-matrix r-pkgconfig r-rlang)) (home-page "https://igraph.org") (synopsis "Network analysis and visualization") (description @@ -33318,14 +33378,14 @@ for creating, simulating, or validating values for such parameters.") (define-public r-tune (package (name "r-tune") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "tune" version)) (sha256 (base32 - "1pp3pgxwpqihxfjwf9mb5rc0yv60q47n7z399z21zp4jbwryxymh")))) + "0kl8bpd1i5ir6lrx055rilvb7kg0iws5f4618956h3g8sif1lvmg")))) (properties `((upstream-name . "tune"))) (build-system r-build-system) (propagated-inputs @@ -33363,14 +33423,14 @@ methods, and post-processing steps.") (define-public r-workflowsets (package (name "r-workflowsets") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "workflowsets" version)) (sha256 (base32 - "12wj0m6kqnjh8k5k14kqh40wf14gzyg5l3shhbpr2lvk87l9ssqq")))) + "1rv82lx1vmhjqlim7y5vpfsa7mb6msvkhiz17hxr5k9244ykmbhi")))) (properties `((upstream-name . "workflowsets"))) (build-system r-build-system) (propagated-inputs @@ -33642,14 +33702,14 @@ analysis using @code{dplyr}, @code{ggplot2}, and other Tidy tools.") (define-public r-parsnip (package (name "r-parsnip") - (version "1.0.4") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "parsnip" version)) (sha256 (base32 - "1305z2pamxxaqy0qylb8vq6ixs934kfc9h2si2fdy7q5wjpdjnjh")))) + "13bp44i8i99yiahdjikf0xidfgxd251nhbxsnsw0ax1lv24fpggc")))) (properties `((upstream-name . "parsnip"))) (build-system r-build-system) (propagated-inputs @@ -34036,14 +34096,14 @@ designs. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.") (define-public r-seqminer (package (name "r-seqminer") - (version "8.6") + (version "8.9") (source (origin (method url-fetch) (uri (cran-uri "seqminer" version)) (sha256 (base32 - "1fm76mam5hp5v0hj27ywna7vafrw7mnwph30fqdb17163rrhr1ca")))) + "1cnsy1cjz4rcm32hzcvr1d43y4m7sdkzim1mwsn3490mf3xmi3i1")))) (build-system r-build-system) (inputs (list zlib)) @@ -35842,14 +35902,14 @@ light-weight geometry library used by @url{http://postgis.net/,PostGIS}.") (define-public r-stars (package (name "r-stars") - (version "0.6-0") + (version "0.6-1") (source (origin (method url-fetch) (uri (cran-uri "stars" version)) (sha256 (base32 - "0zwbsqp8bihcq5sjdw05pvbh4l9s68p0qw3ffkk0jphsipvy9za9")))) + "19q44bs2w12lyim8gzfpgxfkp2cdf29cav4cv74vzsxrv8xdny0z")))) (properties `((upstream-name . "stars"))) (build-system r-build-system) (propagated-inputs |