diff options
Diffstat (limited to 'gnu/packages/crates-io.scm')
| -rw-r--r-- | gnu/packages/crates-io.scm | 801 |
1 files changed, 788 insertions, 13 deletions
diff --git a/gnu/packages/crates-io.scm b/gnu/packages/crates-io.scm index f09ac91df5..538267c560 100644 --- a/gnu/packages/crates-io.scm +++ b/gnu/packages/crates-io.scm @@ -3362,6 +3362,52 @@ coverage-guided, mutation-based fuzzers.") that runs on Argon2.") (license license:expat))) +(define-public rust-arr-macro-impl-0.1 + (package + (name "rust-arr-macro-impl") + (version "0.1.3") + (source (origin + (method url-fetch) + (uri (crate-uri "arr_macro_impl" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1lbjilz3pvwav72dfkcbz99rsq7m04xbdpqh8g3yvx3jsn5wf286")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-proc-macro-hack" ,rust-proc-macro-hack-0.5) + ("rust-quote" ,rust-quote-1) + ("rust-syn" ,rust-syn-1)))) + (home-page "https://github.com/JoshMcguigan/arr_macro") + (synopsis "Private impl crate for arr_macro") + (description "This package provides a private @code{impl} crate for +@code{arr_macro}.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-arr-macro-0.1 + (package + (name "rust-arr-macro") + (version "0.1.3") + (source (origin + (method url-fetch) + (uri (crate-uri "arr_macro" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "199086q8zva66lbg9bpz6fa67s81ra7yfa8148cwy1w7lkymn43a")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-arr-macro-impl" ,rust-arr-macro-impl-0.1) + ("rust-proc-macro-hack" ,rust-proc-macro-hack-0.5)))) + (home-page "https://github.com/JoshMcguigan/arr_macro") + (synopsis "Initialize arrays with ease") + (description "Array macro helps initialize arrays. It is useful when +initializing large arrays (greater than 32 elements), or arrays of types which +do not implement the copy or default traits.") + (license (list license:expat license:asl2.0)))) + (define-public rust-array-macro-1 (package (name "rust-array-macro") @@ -3432,7 +3478,7 @@ structures.") (define-public rust-arrayvec-0.7 (package (name "rust-arrayvec") - (version "0.7.0") + (version "0.7.2") (source (origin (method url-fetch) @@ -3441,7 +3487,7 @@ structures.") (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1xza6jbs8x51yhh4qnwjw1crm33bhl975r965fpq1hqhpfq5hbss")))) + "1mjl8jjqxpl0x7sm9cij61cppi7yi38cdrd1l8zjw7h7qxk2v9cd")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -8493,7 +8539,7 @@ alphabet.") (define-public rust-bstr-0.2 (package (name "rust-bstr") - (version "0.2.15") + (version "0.2.17") (source (origin (method url-fetch) @@ -8502,7 +8548,7 @@ alphabet.") (string-append name "-" version ".tar.gz")) (sha256 (base32 - "0gca4v6448clsssll3y787jgw542c9mw9phqdi7419g1jfnlf2x4")))) + "08rjbhysy6gg27db2h3pnhvr2mlr5vkj797i9625kwg8hgrnjdds")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -12208,6 +12254,32 @@ diagnostics easy and relatively painless for everyone!") ("rust-structopt" ,rust-structopt-0.3) ("rust-unindent" ,rust-unindent-0.1)))))) +(define-public rust-coitrees-0.2 + (package + (name "rust-coitrees") + (version "0.2.1") + (source (origin + (method url-fetch) + (uri (crate-uri "coitrees" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1l2ybr8n02vm08wq9mrix7r07bgwm85i6fyachlm8d626w9w9d3f")))) + (build-system cargo-build-system) + (arguments + ;; Check phase fails with: + ;; no function or associated item named `with_name` found for struct + ;; `Arg` in the current scope + `(#:tests? #false + #:cargo-development-inputs + (("rust-clap" ,rust-clap-3)))) + (home-page "https://github.com/dcjones/coitrees") + (synopsis "Data structure for overlap queries on sets of intervals") + (description + "This package provides a very fast data structure for overlap queries on +sets of intervals.") + (license license:expat))) + (define-public rust-color-backtrace-0.5 (package (name "rust-color-backtrace") @@ -13050,6 +13122,30 @@ this to write Rust programs which can be customized by end users easily.") that logs panics to @code{console.error}.") (license (list license:expat license:asl2.0)))) +(define-public rust-console-log-0.2 + (package + (name "rust-console-log") + (version "0.2.0") + (source (origin + (method url-fetch) + (uri (crate-uri "console_log" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "150li8pznpfpn4q0f7g9jwq2hnd5wik0w8378zaa1wffc5ckf6jh")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-log" ,rust-log-0.4) + ("rust-wasm-bindgen" ,rust-wasm-bindgen-0.2) + ("rust-web-sys" ,rust-web-sys-0.3)))) + (home-page "https://github.com/iamcodemaker/console_log") + (synopsis "Route Rust log messages to the browser's console") + (description + "This package provides a logging facility that routes Rust log messages to +the browser's console.") + (license (list license:expat license:asl2.0)))) + (define-public rust-console-log-0.1 (package (name "rust-console-log") @@ -14530,14 +14626,14 @@ criterion.") (define-public rust-crossbeam-channel-0.5 (package (name "rust-crossbeam-channel") - (version "0.5.0") + (version "0.5.6") (source (origin (method url-fetch) (uri (crate-uri "crossbeam-channel" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0xfplw54pskl3kyf2q6kw8y2phnq6wn8pqxx003n8qfkz3hnx8nw")))) + (base32 "08f5f043rljl82a06d1inda6nl2b030s7yfqp31ps8w8mzfh9pf2")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -14745,14 +14841,14 @@ message passing.") (define-public rust-crossbeam-queue-0.3 (package (name "rust-crossbeam-queue") - (version "0.3.1") + (version "0.3.6") (source (origin (method url-fetch) (uri (crate-uri "crossbeam-queue" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0mk790w2y7cn9zqj6cn1kl8vvgaamlkj6fmpxg1iprdqyp3v6v0g")))) + (base32 "19ram1wp87i57w834hwl95mzz9g53qlzkraq6lvab629n21jbm0w")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs @@ -21284,6 +21380,40 @@ You can use this crate to turn non-blocking data structures into async or blocking data structures.") (license (list license:asl2.0 license:expat)))) +(define-public rust-executors-0.9 + (package + (name "rust-executors") + (version "0.9.0") + (source (origin + (method url-fetch) + (uri (crate-uri "executors" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0z8gn5vcr0x1db1bvahhmby9mpr1jgzd4qfvm25mja5js3agk51a")))) + (build-system cargo-build-system) + (arguments + ;; TODO: build needs metrics_printer + `(#:skip-build? #t + #:cargo-inputs + (("rust-arr-macro" ,rust-arr-macro-0.1) + ("rust-async-task" ,rust-async-task-4) + ("rust-core-affinity" ,rust-core-affinity-0.5) + ("rust-crossbeam-channel" ,rust-crossbeam-channel-0.5) + ("rust-crossbeam-deque" ,rust-crossbeam-deque-0.8) + ("rust-crossbeam-utils" ,rust-crossbeam-utils-0.8) + ("rust-log" ,rust-log-0.4) + ("rust-metrics" ,rust-metrics-0.14) + ("rust-num-cpus" ,rust-num-cpus-1) + ("rust-rand" ,rust-rand-0.8) + ("rust-synchronoise" ,rust-synchronoise-1) + ("rust-threadpool" ,rust-threadpool-1)))) + (home-page "https://github.com/Bathtor/rust-executors") + (synopsis "Collection of high-performance task executors") + (description + "This package provides a collection of high-performance task executors.") + (license license:expat))) + (define-public rust-exitcode-1 (package (name "rust-exitcode") @@ -23307,6 +23437,29 @@ helpful error messages.") process and much more.") (license license:expat))) +(define-public rust-fs-utils-1 + (package + (name "rust-fs-utils") + (version "1.1.4") + (source (origin + (method url-fetch) + (uri (crate-uri "fs-utils" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "14r5wl14mz227v0lpy89lvjzfnxgdxigvrrmm6c4r52w03fakivg")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-quick-error" ,rust-quick-error-1)) + #:cargo-development-inputs + (("rust-tempfile" ,rust-tempfile-3)))) + (home-page "https://github.com/Byron/fs-utils-rs") + (synopsis "Utilities to help working with the filesytem") + (description "This package provides a bunch of utilities to help working +with the filesytem.") + (license (list license:expat license:asl2.0)))) + (define-public rust-fs2-0.2 (package (name "rust-fs2") @@ -25885,7 +26038,11 @@ graphics.") ("rust-smallvec" ,rust-smallvec-1) ("rust-takeable-option" ,rust-takeable-option-0.5)) #:cargo-development-inputs - (("rust-gl-generator" ,rust-gl-generator-0.14)))) + (("rust-cgmath" ,rust-cgmath-0.18) + ("rust-genmesh" ,rust-genmesh-0.6) + ("rust-gl-generator" ,rust-gl-generator-0.14) + ("rust-obj" ,rust-obj-0.10) + ("rust-ouroboros" ,rust-ouroboros-0.14)))) (home-page "https://github.com/glium/glium") (synopsis "OpenGL wrapper") (description @@ -28073,6 +28230,48 @@ Hash-based Message Authentication Code algorithm} for SHA1.") characters in HTML, decoding and unescaping HTML entities as well.") (license license:expat))) +(define-public rust-hts-sys-2 + (package + (name "rust-hts-sys") + (version "2.0.2") + (source (origin + (method url-fetch) + (uri (crate-uri "hts-sys" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1qn1qz2xa69x2dj1fbh91avm9943rbcykr37zs68pb2bdy847i3j")) + (modules '((guix build utils))) + (snippet + '(substitute* "Cargo.toml" + ;; Do not use zlib-ng; just use zlib. + (("features = \\[\"zlib-ng\", \"static\"\\]") "") + ;; No static libraries please. + (("\"static-curl\", \"static-ssl\",") "") + ((", \"static\"") "") + (("\\[\"static\"\\]") "[]"))))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-bindgen" ,rust-bindgen-0.53) + ("rust-bzip2-sys" ,rust-bzip2-sys-0.1) + ("rust-cc" ,rust-cc-1) + ("rust-curl-sys" ,rust-curl-sys-0.4) + ("rust-fs-utils" ,rust-fs-utils-1) + ("rust-glob" ,rust-glob-0.3) + ("rust-libdeflate-sys" ,rust-libdeflate-sys-0.5) + ("rust-libz-sys" ,rust-libz-sys-1) + ("rust-lzma-sys" ,rust-lzma-sys-0.1) + ("rust-openssl-sys" ,rust-openssl-sys-0.9)))) + (inputs + (list curl openssl xz zlib)) + (native-inputs + (list cmake-minimal pkg-config)) + (home-page "https://github.com/samtools/htslib.git") + (synopsis "Rust bindings to HTSlib") + (description "This library provides Rust bindings to HTSlib.") + (license license:expat))) + (define-public rust-http-0.2 (package (name "rust-http") @@ -29029,6 +29228,27 @@ with hyper.") (("rust-rustc-serialize" ,rust-rustc-serialize-0.3) ("rust-rustc-test" ,rust-rustc-test-0.3)))))) +(define-public rust-ieee754-0.2 + (package + (name "rust-ieee754") + (version "0.2.6") + (source (origin + (method url-fetch) + (uri (crate-uri "ieee754" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1771d2kvw1wga65yrg9m7maky0fzsaq9hvhkv91n6gmxmjfdl1wh")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.2)))) + (home-page "https://github.com/huonw/ieee754") + (synopsis "Low-level manipulations of IEEE754 floating-point numbers") + (description "This is a package for low-level manipulations of IEEE754 +floating-point numbers.") + (license (list license:expat license:asl2.0)))) + (define-public rust-if-chain-1 (package (name "rust-if-chain") @@ -31906,6 +32126,29 @@ macros on libc without stdlib.") (description "This package provides FFI bindings to libdbus.") (license (list license:asl2.0 license:expat)))) +(define-public rust-libdeflate-sys-0.5 + (package + (name "rust-libdeflate-sys") + (version "0.5.0") + (source (origin + (method url-fetch) + (uri (crate-uri "libdeflate-sys" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "07ychzvz9xrqs92frs3zpny0l8jp3sndzqpl7zhv6kdqhzx9xqr1")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-cc" ,rust-cc-1)))) + (home-page "https://github.com/adamkewley/libdeflater") + (synopsis "Bindings to libdeflate") + (description + "This package provides bindings to libdeflate for DEFLATE (de)compression +exposed as non-streaming buffer operations. It contains bindings for raw +deflate, zlib, and gzip data.") + (license license:asl2.0))) + (define-public rust-libflate-1 (package (name "rust-libflate") @@ -32441,6 +32684,63 @@ library.") library.") (license (list license:expat license:asl2.0)))) +(define-public rust-libradicl-0.4 + (package + (name "rust-libradicl") + (version "0.4.1") + (source (origin + (method url-fetch) + (uri (crate-uri "libradicl" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "10j2f2iv4037315fiqppk7x2bx1mnw6gns3qqwyhcyh4sgbz3ka4")))) + (build-system cargo-build-system) + (arguments + `(#:tests? #false ;fail to compile InternalVersionInfo + #:cargo-inputs + (("rust-ahash" ,rust-ahash-0.7) + ("rust-arrayvec" ,rust-arrayvec-0.7) + ("rust-bincode" ,rust-bincode-1) + ("rust-bio-types" ,rust-bio-types-0.12) + ("rust-bstr" ,rust-bstr-0.2) + ("rust-crossbeam-channel" ,rust-crossbeam-channel-0.5) + ("rust-crossbeam-queue" ,rust-crossbeam-queue-0.3) + ("rust-csv" ,rust-csv-1) + ("rust-dashmap" ,rust-dashmap-4) + ("rust-executors" ,rust-executors-0.9) + ("rust-flate2" ,rust-flate2-1) + ("rust-indicatif" ,rust-indicatif-0.16) + ("rust-itertools" ,rust-itertools-0.10) + ("rust-needletail" ,rust-needletail-0.4) + ("rust-num" ,rust-num-0.4) + ("rust-num-format" ,rust-num-format-0.4) + ("rust-petgraph" ,rust-petgraph-0.6) + ("rust-quickersort" ,rust-quickersort-3) + ("rust-rand" ,rust-rand-0.8) + ("rust-rust-htslib" ,rust-rust-htslib-0.38) + ("rust-sce" ,rust-sce-0.1) + ("rust-scroll" ,rust-scroll-0.10) + ("rust-serde" ,rust-serde-1) + ("rust-serde-json" ,rust-serde-json-1) + ("rust-slog" ,rust-slog-2) + ("rust-slog-async" ,rust-slog-async-2) + ("rust-slog-term" ,rust-slog-term-2) + ("rust-smallvec" ,rust-smallvec-1) + ("rust-snap" ,rust-snap-1) + ("rust-sprs" ,rust-sprs-0.10) + ("rust-statrs" ,rust-statrs-0.15)))) + (inputs + (list xz zlib)) + (native-inputs + (list pkg-config)) + (home-page "https://github.com/COMBINE-lab/alevin-fry") + (synopsis "Support library for alevin-fry") + (description "This package provides a support library for alevin-fry, a +suite of tools for the rapid, accurate and memory-frugal processing +single-cell and single-nucleus sequencing data.") + (license license:bsd-3))) + (define-public rust-libsqlite3-sys-0.23 (package (name "rust-libsqlite3-sys") @@ -32652,6 +32952,30 @@ known as zlib).") (license (list license:asl2.0 license:expat)))) +(define-public rust-libz-ng-sys-1 + (package + (name "rust-libz-ng-sys") + (version "1.1.8") + (source (origin + (method url-fetch) + (uri (crate-uri "libz-ng-sys" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1wp0aya5hh76h1acspvrrsvq2fl0kyb8dpi6wy0zaswnm6bax6a3")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-cmake" ,rust-cmake-0.1) + ("rust-libc" ,rust-libc-0.2)))) + (home-page "https://github.com/rust-lang/libz-sys") + (synopsis "Low-level bindings to zlib-ng (libz-ng)") + (description + "This package provides low-level bindings to zlib-ng (libz-ng), a +high-performance zlib library.") + (license (list license:expat license:asl2.0)))) + (define-public rust-lifeguard-0.6 (package (name "rust-lifeguard") @@ -32728,6 +33052,48 @@ libraries have. "Efficiently insert line separators.") (license license:asl2.0))) +(define-public rust-linear-map-1 + (package + (name "rust-linear-map") + (version "1.2.0") + (source (origin + (method url-fetch) + (uri (crate-uri "linear-map" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1vh3sczl4xb5asdlpafdf3y4g9bp63fgs8y2a2sjgmcsn7v21bmz")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-serde" ,rust-serde-1) + ("rust-serde-test" ,rust-serde-test-1)))) + (home-page "https://github.com/contain-rs/linear-map") + (synopsis "Map implemented by searching linearly in a vector") + (description + "This package provides a map implemented by searching linearly in a +vector.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-linecount-0.1 + (package + (name "rust-linecount") + (version "0.1.0") + (source (origin + (method url-fetch) + (uri (crate-uri "linecount" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1n2733qcmvxl3fra3924yj8sf21vr6f6g6dg6wnhbkxr8fia9mfm")))) + (build-system cargo-build-system) + (arguments '(#:skip-build? #t)) + (home-page "https://github.com/eclarke/linecount") + (synopsis "Quickly count lines in a file") + (description "This package provides a function @code{count_lines} +to count the number of lines in a file.") + (license license:expat))) + (define-public rust-link-cplusplus-1 (package (name "rust-link-cplusplus") @@ -35182,6 +35548,55 @@ based on Rustls and Ring.") and XXH3 algorithms.") (license license:expat))) +(define-public rust-metrics-macros-0.2 + (package + (name "rust-metrics-macros") + (version "0.2.0") + (source (origin + (method url-fetch) + (uri (crate-uri "metrics-macros" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0yy2dc9g3m1h8df6bmnqh1sngyvrgznz1fjpkp9rz1is9p6n1b0i")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-lazy-static" ,rust-lazy-static-1) + ("rust-proc-macro-hack" ,rust-proc-macro-hack-0.5) + ("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-regex" ,rust-regex-1) + ("rust-syn" ,rust-syn-1)))) + (home-page "https://github.com/metrics-rs/metrics") + (synopsis "Macros for the metrics crate") + (description "This package provides macros for the metrics crate.") + (license license:expat))) + +(define-public rust-metrics-0.14 + (package + (name "rust-metrics") + (version "0.14.2") + (source (origin + (method url-fetch) + (uri (crate-uri "metrics" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0lf80vznlh0p06nchj08nlqgf3bajnwr6w3syflg7ffg3mh8bqjq")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-metrics-macros" ,rust-metrics-macros-0.2) + ("rust-proc-macro-hack" ,rust-proc-macro-hack-0.5)) + #:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.3) + ("rust-trybuild" ,rust-trybuild-1)))) + (home-page "https://github.com/metrics-rs/metrics") + (synopsis "Lightweight metrics facade") + (description "This package provides a lightweight metrics facade.") + (license license:expat))) + (define-public rust-metrohash-1 (package (name "rust-metrohash") @@ -35614,10 +36029,8 @@ drop-in replacement for miniz.") "1zw5glv8z2d99c82jy2za97hh9p6377xmf4rbwz7jynsdfxfngg5")))) (build-system cargo-build-system) (arguments - `(#:cargo-inputs - (("rust-serde" ,rust-serde-1)) - #:cargo-development-inputs - (("rust-serde-json" ,rust-serde-json-1)))) + `(#:cargo-inputs (("rust-serde" ,rust-serde-1)) + #:cargo-development-inputs (("rust-serde-json" ,rust-serde-json-1)))) (home-page "https://github.com/kvark/mint") (synopsis "Math interoperability standard types") (description @@ -37436,6 +37849,45 @@ general elements and for numerics.") (description "This package provides FFI bindings for the Android NDK.") (license (list license:expat license:asl2.0)))) +(define-public rust-needletail-0.4 + (package + (name "rust-needletail") + (version "0.4.1") + (source (origin + (method url-fetch) + (uri (crate-uri "needletail" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1k535wlg0khac2gz3q84rlcqc5r89jyw73ww25vfgc04plzc9d3z")))) + (build-system cargo-build-system) + (arguments + ;; Two tests fail due to missing files. + ;; - parser::fastq::test::test_bad_headers + ;; - parser::fastq::test::test_fastq_with_random_tsv_inside + `(#:tests? #false + #:cargo-inputs + (("rust-bio" ,rust-bio-0.33) + ("rust-buf-redux" ,rust-buf-redux-0.8) + ("rust-bytecount" ,rust-bytecount-0.6) + ("rust-bzip2" ,rust-bzip2-0.4) + ("rust-flate2" ,rust-flate2-1) + ("rust-memchr" ,rust-memchr-2) + ("rust-pyo3" ,rust-pyo3-0.13) + ("rust-xz2" ,rust-xz2-0.1)) + #:cargo-development-inputs + (("rust-assert-cmd" ,rust-assert-cmd-1) + ("rust-escargot" ,rust-escargot-0.5) + ("rust-predicates" ,rust-predicates-1) + ("rust-seq-io" ,rust-seq-io-0.3)))) + (inputs (list xz)) + (native-inputs (list pkg-config)) + (home-page "https://github.com/onecodex/needletail") + (synopsis "FASTX parsing and k-mer methods") + (description "Needletail is a minimal-copying FASTA/FASTQ parser and k-mer +processing library for Rust.") + (license license:expat))) + (define-public rust-neli-0.4 (package (name "rust-neli") @@ -39618,6 +40070,25 @@ mathematics.") `(#:cargo-inputs (("rust-num-traits" , rust-num-traits-0.2)))))) +(define-public rust-number-prefix-0.4 + (package + (name "rust-number-prefix") + (version "0.4.0") + (source (origin + (method url-fetch) + (uri (crate-uri "number_prefix" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1wvh13wvlajqxkb1filsfzbrnq0vrmrw298v2j3sy82z1rm282w3")))) + (build-system cargo-build-system) + (home-page "https://github.com/ogham/rust-number-prefix") + (synopsis "Format numeric prefixes: kilo, giga, kibi") + (description + "This package provides a library for formatting numeric prefixes: kilo, +giga, kibi.") + (license license:expat))) + (define-public rust-number-prefix-0.3 (package (name "rust-number-prefix") @@ -39679,6 +40150,27 @@ obfuscation for Rust. The string constant itself is embedded in obfuscated form and deobfuscated locally.") (license license:expat))) +(define-public rust-obj-0.10 + (package + (name "rust-obj") + (version "0.10.2") + (source (origin + (method url-fetch) + (uri (crate-uri "obj" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0jks8qzjn59na40dv9m0q2j540i04cddbkbq02scgk9qawj9b705")))) + (build-system cargo-build-system) + (arguments + `(#:tests? #false ;missing files + #:cargo-inputs (("rust-genmesh" ,rust-genmesh-0.6)))) + (home-page "https://github.com/kvark/obj") + (synopsis "Package for loading Wavefront .obj files") + (description + "This package provides a package for loading Wavefront @code{.obj} files.") + (license license:asl2.0))) + (define-public rust-obj-0.9 (package (name "rust-obj") @@ -47783,6 +48275,33 @@ integers, floats, tuples, booleans, lists, strings, options and results.") #:cargo-development-inputs (("rust-quickcheck" ,rust-quickcheck-0.8)))))) +(define-public rust-quickersort-3 + (package + (name "rust-quickersort") + (version "3.0.1") + (source (origin + (method url-fetch) + (uri (crate-uri "quickersort" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "02r7wplnw7m1dhjah8p89inxn9g4nwb7ga7xdn95cffwpwn88z1h")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-nodrop" ,rust-nodrop-0.1) + ("rust-unreachable" ,rust-unreachable-1)) + #:cargo-development-inputs + (("rust-itertools" ,rust-itertools-0.7) + ("rust-num-traits" ,rust-num-traits-0.2)))) + (home-page "https://github.com/notriddle/quickersort") + (synopsis "Fast sorting") + (description + "This package implements fast sorting compatible with stable Rust. It +also has (optional) support for efficient and robust sorting of floating point +numbers.") + (license (list license:expat license:asl2.0)))) + (define-public rust-quine-mc-cluskey-0.2 (package (name "rust-quine-mc-cluskey") @@ -51494,6 +52013,49 @@ please consider using @code{async-std} or @code{tokio}.") (inputs (list sqlite)))) +(define-public rust-rust-htslib-0.38 + (package + (name "rust-rust-htslib") + (version "0.38.2") + (source (origin + (method url-fetch) + (uri (crate-uri "rust-htslib" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "070sihnvyiyqcw8yjkdl8hvav598bsw36m722phgd2b394k6djia")))) + (build-system cargo-build-system) + (arguments + ;; TODO: cannot find openssl_src + `(#:skip-build? #t + #:cargo-inputs + (("rust-bio-types" ,rust-bio-types-0.12) + ("rust-byteorder" ,rust-byteorder-1) + ("rust-custom-derive" ,rust-custom-derive-0.1) + ("rust-derive-new" ,rust-derive-new-0.5) + ("rust-hts-sys" ,rust-hts-sys-2) + ("rust-ieee754" ,rust-ieee754-0.2) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-libc" ,rust-libc-0.2) + ("rust-linear-map" ,rust-linear-map-1) + ("rust-newtype-derive" ,rust-newtype-derive-0.1) + ("rust-regex" ,rust-regex-1) + ("rust-serde" ,rust-serde-1) + ("rust-serde-bytes" ,rust-serde-bytes-0.11) + ("rust-thiserror" ,rust-thiserror-1) + ("rust-url" ,rust-url-2)) + #:cargo-development-inputs + (("rust-bincode" ,rust-bincode-1) + ("rust-pretty-assertions" ,rust-pretty-assertions-0.6)))) + (inputs (list openssl)) + (native-inputs (list pkg-config)) + (home-page "https://github.com/rust-bio/rust-htslib.git") + (synopsis "HTSlib bindings and API for reading and writing BAM files") + (description + "This library provides HTSlib bindings and a high level Rust API for +reading and writing BAM files.") + (license license:expat))) + (define-public rust-rustsec-0.25 (package (name "rust-rustsec") @@ -53003,6 +53565,37 @@ rustc compiler.") ("rust-serde-derive" ,rust-serde-derive-1) ("rust-webpki-roots" ,rust-webpki-roots-0.14)))))) +(define-public rust-rustls-ffi-0.8 + (package + (name "rust-rustls-ffi") + (version "0.8.2") + (source (origin + (method url-fetch) + (uri (crate-uri "rustls-ffi" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "06kqrvm1d5ps9pml26zdd2hm8hh20j6svwvqibpnx7m5rh3jg9cx")))) + (build-system cargo-build-system) + ;; Build needs cbindgen-0.19 + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-libc" ,rust-libc-0.2) + ("rust-log" ,rust-log-0.4) + ("rust-num-enum" ,rust-num-enum-0.5) + ("rust-rustls" ,rust-rustls-0.20) + ("rust-rustls-pemfile" ,rust-rustls-pemfile-0.2) + ("rust-sct" ,rust-sct-0.7) + ("rust-webpki" ,rust-webpki-0.22)))) + (home-page "https://github.com/rustls/rustls-ffi") + (synopsis "C to rustls bindings") + (description "This package contains FFI bindings for the rustls TLS +library, so you can use the library in C programs or any other language that +supports FFI.") + ;; Use under the terms of any of these licenses + (license (list license:asl2.0 license:isc license:expat)))) + (define-public rust-rustls-native-certs-0.6 (package (name "rust-rustls-native-certs") @@ -54052,6 +54645,33 @@ encodable types.") "This package provides a simple scanf()-like input for Rust") (license license:expat))) +(define-public rust-sce-0.1 + (package + (name "rust-sce") + (version "0.1.2") + (source (origin + (method url-fetch) + (uri (crate-uri "sce" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1fv0nbx6r44rcqfy6881gin30d92zgxl0jrx4hfl725h0425i74j")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-byteorder" ,rust-byteorder-1) + ("rust-csv" ,rust-csv-1) + ("rust-flate2" ,rust-flate2-1) + ("rust-num" ,rust-num-0.4) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-sprs" ,rust-sprs-0.11)))) + (home-page "https://github.com/parazodiac/SingleCellExperiment") + (synopsis "Import and manage various single-cell matrices") + (description + "This package provides a library for importing and managing various +single-cell matrices.") + (license license:bsd-3))) + (define-public rust-schannel-0.1 (package (name "rust-schannel") @@ -59602,6 +60222,70 @@ OIDs)") (description "Simple SPMC channel") (license (list license:expat license:asl2.0)))) +(define-public rust-sprs-0.11 + (package + (name "rust-sprs") + (version "0.11.0") + (source (origin + (method url-fetch) + (uri (crate-uri "sprs" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0w6xishm9jxqjy83as7g14474cn1xb55vqz8afqw9d7and41x9vf")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t ;8 test failures due to "No such file or directory" + #:cargo-inputs + (("rust-alga" ,rust-alga-0.9) + ("rust-approx" ,rust-approx-0.5) + ("rust-ndarray" ,rust-ndarray-0.15) + ("rust-num-complex" ,rust-num-complex-0.4) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-num-cpus" ,rust-num-cpus-1) + ("rust-rayon" ,rust-rayon-1) + ("rust-serde" ,rust-serde-1) + ("rust-smallvec" ,rust-smallvec-1)) + #:cargo-development-inputs + (("rust-bencher" ,rust-bencher-0.1) + ("rust-bincode" ,rust-bincode-1) + ("rust-tobj" ,rust-tobj-3)))) + (home-page "https://github.com/vbarrielle/sprs") + (synopsis "Sparse matrix library") + (description "This package provides a sparse matrix library.") + ;; Either license can be chosen + (license (list license:expat license:asl2.0)))) + +(define-public rust-sprs-0.10 + (package + (inherit rust-sprs-0.11) + (name "rust-sprs") + (version "0.10.0") + (source (origin + (method url-fetch) + (uri (crate-uri "sprs" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "18qwm1wnc1jbzdpl0wfrrybb6rak74zv8jmfg87id7ksb6crkz6r")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t ;8 test failures due to "No such file or directory" + #:cargo-inputs + (("rust-alga" ,rust-alga-0.9) + ("rust-approx" ,rust-approx-0.3) + ("rust-ndarray" ,rust-ndarray-0.14) + ("rust-num-complex" ,rust-num-complex-0.2) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-num-cpus" ,rust-num-cpus-1) + ("rust-rayon" ,rust-rayon-1) + ("rust-serde" ,rust-serde-1) + ("rust-smallvec" ,rust-smallvec-1)) + #:cargo-development-inputs + (("rust-bencher" ,rust-bencher-0.1) + ("rust-bincode" ,rust-bincode-1) + ("rust-tobj" ,rust-tobj-2)))))) + (define-public rust-rspotify-0.10 (package (name "rust-rspotify") @@ -61791,6 +62475,28 @@ a syntax tree of Rust source code.") "This package provides the features between \"full\" and \"derive\" of syn.") (license (list license:asl2.0 license:expat)))) +(define-public rust-synchronoise-1 + (package + (name "rust-synchronoise") + (version "1.0.0") + (source (origin + (method url-fetch) + (uri (crate-uri "synchronoise" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1szasv8xl6z3gxfq8h8wllw2mq53d71nn29achxsnfcxzh7fs5yp")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-crossbeam-queue" ,rust-crossbeam-queue-0.1)))) + (home-page "https://github.com/QuietMisdreavus/synchronoise") + (synopsis "Synchronization primitives") + (description + "This package provides synchronization primitives that build upon the +standard library.") + (license (list license:expat license:asl2.0)))) + (define-public rust-synom-0.11 (package (name "rust-synom") @@ -65066,6 +65772,47 @@ to a style defined by John Gruber for post titles on his website ``Daring Fireball''.") (license license:expat))) +(define-public rust-tobj-3 + (package + (name "rust-tobj") + (version "3.1.0") + (source (origin + (method url-fetch) + (uri (crate-uri "tobj" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1q9hxhdzbqcrpnmja98mnd5890jf3x1njg0q1lgpj8yg5j29ryc9")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t ;tests are incomplete + #:cargo-inputs + (("rust-ahash" ,rust-ahash-0.7) + ("rust-log" ,rust-log-0.4)))) + (home-page "https://github.com/Twinklebear/tobj") + (synopsis "Lightweight OBJ loader in the spirit of tinyobjloader") + (description + "This package provides a lightweight OBJ loader in the spirit of +tinyobjloader.") + (license license:expat))) + +(define-public rust-tobj-2 + (package + (inherit rust-tobj-3) + (name "rust-tobj") + (version "2.0.4") + (source (origin + (method url-fetch) + (uri (crate-uri "tobj" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "06w8ix9nk38wli0pjfl22hiyy07byhdcz18nkwhzg775x1dzas14")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t ;tests are incomplete + #:cargo-inputs (("rust-log" ,rust-log-0.4)))))) + (define-public rust-tokio-1 (package (name "rust-tokio") @@ -75041,6 +75788,34 @@ for @code{uint} and @code{fixed_hash}.") a trait for tuples.") (license (list license:asl2.0 license:expat)))) +(define-public rust-indicatif-0.16 + (package + (name "rust-indicatif") + (version "0.16.2") + (source (origin + (method url-fetch) + (uri (crate-uri "indicatif" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "06xyjs0kzqiqkjn60n1miwm2l87sa9p2lmzz0ymq18y72z37s81d")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-console" ,rust-console-0.15) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-number-prefix" ,rust-number-prefix-0.4) + ("rust-rayon" ,rust-rayon-1) + ("rust-regex" ,rust-regex-1) + ("rust-unicode-segmentation" ,rust-unicode-segmentation-1) + ("rust-unicode-width" ,rust-unicode-width-0.1)))) + (home-page "https://github.com/console-rs/indicatif") + (synopsis "Progress bar and cli reporting library for Rust") + (description + "This package provides a progress bar and cli reporting library for +Rust.") + (license license:expat))) + (define-public rust-inflections-1 (package (name "rust-inflections") |