diff options
Diffstat (limited to 'gnu/packages/java.scm')
| -rw-r--r-- | gnu/packages/java.scm | 1349 |
1 files changed, 1170 insertions, 179 deletions
diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm index d3fa88adbd..b4f64e2c2e 100644 --- a/gnu/packages/java.scm +++ b/gnu/packages/java.scm @@ -59,6 +59,7 @@ #:use-module (gnu packages image) #:use-module (gnu packages libffi) #:use-module (gnu packages linux) ;alsa + #:use-module (gnu packages maths) #:use-module (gnu packages web) #:use-module (gnu packages wget) #:use-module (gnu packages pkg-config) @@ -1587,7 +1588,8 @@ IcedTea build harness.") (modules '((guix build utils))) (snippet '(begin - (substitute* "acinclude.m4" + (substitute* '("configure" + "acinclude.m4") ;; Do not embed build time (("(DIST_ID=\"Custom build).*$" _ prefix) (string-append prefix "\"\n")) @@ -1596,65 +1598,90 @@ IcedTea build harness.") "DIST_NAME=\"guix\"")) #t)))) (arguments - (substitute-keyword-arguments (package-arguments icedtea-7) - ((#:configure-flags flags) - `(let ((jdk (assoc-ref %build-inputs "jdk"))) - `(;;"--disable-bootstrap" - "--enable-bootstrap" - "--enable-nss" - "--disable-downloading" - "--disable-system-pcsc" - "--disable-system-sctp" - "--disable-tests" ;they are run in the check phase instead - "--with-openjdk-src-dir=./openjdk.src" - ,(string-append "--with-jdk-home=" jdk)))) - ((#:phases phases) - `(modify-phases ,phases - (delete 'fix-x11-extension-include-path) - (delete 'patch-paths) - (delete 'set-additional-paths) - (delete 'patch-patches) - (add-after 'unpack 'patch-jni-libs - ;; Hardcode dynamically loaded libraries. - (lambda _ - (let* ((library-path (search-path-as-string->list - (getenv "LIBRARY_PATH"))) - (find-library (lambda (name) - (search-path - library-path - (string-append "lib" name ".so"))))) - (for-each - (lambda (file) - (catch 'decoding-error - (lambda () - (substitute* file - (("VERSIONED_JNI_LIB_NAME\\(\"(.*)\", \"(.*)\"\\)" - _ name version) - (format #f "\"~a\"" (find-library name))) - (("JNI_LIB_NAME\\(\"(.*)\"\\)" _ name) - (format #f "\"~a\"" (find-library name))))) - (lambda _ - ;; Those are safe to skip. - (format (current-error-port) - "warning: failed to substitute: ~a~%" - file)))) - (find-files "openjdk.src/jdk/src/solaris/native" - "\\.c|\\.h")) - #t))) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((doc (string-append (assoc-ref outputs "doc") - "/share/doc/icedtea")) - (jre (assoc-ref outputs "out")) - (jdk (assoc-ref outputs "jdk"))) - (copy-recursively "openjdk.build/docs" doc) - (copy-recursively "openjdk.build/images/j2re-image" jre) - (copy-recursively "openjdk.build/images/j2sdk-image" jdk) - ;; Install the nss.cfg file to JRE to enable SSL/TLS - ;; support via NSS. - (copy-file (string-append jdk "/jre/lib/security/nss.cfg") - (string-append jre "/lib/security/nss.cfg")) - #t))))))) + `(#:imported-modules + ((guix build ant-build-system) + (guix build syscalls) + ,@%gnu-build-system-modules) + ,@(substitute-keyword-arguments (package-arguments icedtea-7) + ((#:modules modules) + `((guix build utils) + (guix build gnu-build-system) + ((guix build ant-build-system) #:prefix ant:) + (ice-9 match) + (ice-9 popen) + (srfi srfi-19) + (srfi srfi-26))) + ((#:configure-flags flags) + `(let ((jdk (assoc-ref %build-inputs "jdk"))) + `( ;;"--disable-bootstrap" + "--enable-bootstrap" + "--enable-nss" + "--disable-downloading" + "--disable-system-pcsc" + "--disable-system-sctp" + "--disable-tests" ;they are run in the check phase instead + "--with-openjdk-src-dir=./openjdk.src" + ,(string-append "--with-jdk-home=" jdk)))) + ((#:phases phases) + `(modify-phases ,phases + (delete 'fix-x11-extension-include-path) + (delete 'patch-paths) + (delete 'set-additional-paths) + (delete 'patch-patches) + ;; Prevent the keytool from recording the current time when + ;; adding certificates at build time. + (add-after 'unpack 'patch-keystore + (lambda _ + (substitute* "openjdk.src/jdk/src/share/classes/sun/security/provider/JavaKeyStore.java" + (("date = new Date\\(\\);") + "\ +date = (System.getenv(\"SOURCE_DATE_EPOCH\") != null) ?\ +new Date(Long.parseLong(System.getenv(\"SOURCE_DATE_EPOCH\"))) :\ +new Date();")) + #t)) + (add-after 'unpack 'patch-jni-libs + ;; Hardcode dynamically loaded libraries. + (lambda _ + (let* ((library-path (search-path-as-string->list + (getenv "LIBRARY_PATH"))) + (find-library (lambda (name) + (search-path + library-path + (string-append "lib" name ".so"))))) + (for-each + (lambda (file) + (catch 'decoding-error + (lambda () + (substitute* file + (("VERSIONED_JNI_LIB_NAME\\(\"(.*)\", \"(.*)\"\\)" + _ name version) + (format #f "\"~a\"" (find-library name))) + (("JNI_LIB_NAME\\(\"(.*)\"\\)" _ name) + (format #f "\"~a\"" (find-library name))))) + (lambda _ + ;; Those are safe to skip. + (format (current-error-port) + "warning: failed to substitute: ~a~%" + file)))) + (find-files "openjdk.src/jdk/src/solaris/native" + "\\.c|\\.h")) + #t))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((doc (string-append (assoc-ref outputs "doc") + "/share/doc/icedtea")) + (jre (assoc-ref outputs "out")) + (jdk (assoc-ref outputs "jdk"))) + (copy-recursively "openjdk.build/docs" doc) + (copy-recursively "openjdk.build/images/j2re-image" jre) + (copy-recursively "openjdk.build/images/j2sdk-image" jdk) + ;; Install the nss.cfg file to JRE to enable SSL/TLS + ;; support via NSS. + (copy-file (string-append jdk "/jre/lib/security/nss.cfg") + (string-append jre "/lib/security/nss.cfg")) + #t))) + (add-after 'install 'strip-jar-timestamps + (assoc-ref ant:%standard-phases 'strip-jar-timestamps))))))) (native-inputs `(("jdk" ,icedtea-7 "jdk") ("openjdk-src" @@ -2015,6 +2042,510 @@ debugging, etc.") (delete-file-recursively "lib") #t)) (replace 'install (install-jars "bin/lib"))))))) +;; This is the last 3.x release of ECJ +(define-public java-ecj-3 + (package + (name "java-ecj") + (version "3.8.2") + (source (origin + (method url-fetch) + (uri (string-append "http://archive.eclipse.org/eclipse/" + "downloads/drops/R-" version + "-201301310800/ecjsrc-" version ".jar")) + (sha256 + (base32 + "01mdj14jw11g1jfnki4fi8229p0c6zzckd38zqy2w4m3cjcvsx04")))) + (build-system ant-build-system) + (arguments + `(#:tests? #f ; none included + #:jdk ,icedtea-7 ; doesn't build with JDK8+ + #:make-flags (list "-f" "src/build.xml") + #:build-target "build" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-manifest + (lambda _ + ;; Record the main class to make ecj executable. + (with-atomic-file-replacement "src/META-INF/MANIFEST.MF" + (lambda (in out) + (display "Manifest-Version: 1.0 +Main-Class: org.eclipse.jdt.internal.compiler.batch.Main\n" + out))))) + (replace 'install (install-jars "."))))) + (home-page "https://eclipse.org") + (synopsis "Eclipse Java development tools core batch compiler") + (description "This package provides the Eclipse Java core batch compiler.") + (license license:epl1.0))) + +;; This is needed for java-cisd-args4j +(define-public java-ecj-3.5 + (package (inherit java-ecj-3) + (version "3.5.1") + (source (origin + (method url-fetch/zipbomb) + (uri (string-append "http://archive.eclipse.org/eclipse/" + "downloads/drops/R-" version + "-200909170800/ecjsrc-" version ".zip")) + (sha256 + (base32 + "1vnl2mavisc567bip736xzsvvbjif5279wc4a7pbdik5wlir8qr7")))) + (build-system ant-build-system) + (arguments + `(#:tests? #f ; none included + #:jdk ,icedtea-7 ; doesn't build with JDK8+ + #:build-target "build" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-manifest + (lambda _ + ;; Record the main class to make ecj executable. + (with-atomic-file-replacement "META-INF/MANIFEST.MF" + (lambda (in out) + (dump-port in out) + (display "Main-Class: org.eclipse.jdt.internal.compiler.batch.Main\n" + out))))) + (replace 'install (install-jars "."))))) + (native-inputs + `(("unzip" ,unzip))))) + +(define-public java-cisd-base + (let ((revision 38938) + (base-version "14.12.0")) + (package + (name "java-cisd-base") + (version (string-append base-version "-" (number->string revision))) + (source (origin + (method svn-fetch) + (uri (svn-reference + (url (string-append "http://svnsis.ethz.ch/repos/cisd/" + "base/tags/release/" + (version-major+minor base-version) + ".x/" base-version "/base/")) + (revision revision))) + (file-name (string-append "java-cisd-base-" version "-checkout")) + (sha256 + (base32 + "1i5adyf7nzclb0wydgwa1az04qliid8035vpahaandmkmigbnxiy")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Delete included gradle jar + (delete-file-recursively "gradle/wrapper") + ;; Delete pre-built native libraries + (delete-file-recursively "libs") + #t)))) + (build-system ant-build-system) + (arguments + `(#:make-flags '("-file" "build/build.xml") + #:test-target "jar-test" + #:jdk ,icedtea-8 + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'unpack-build-resources + (lambda* (#:key inputs #:allow-other-keys) + (copy-recursively (assoc-ref inputs "build-resources") + "../build_resources") + #t)) + (add-after 'unpack-build-resources 'fix-dependencies + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "build/build.xml" + (("\\$\\{lib\\}/testng/testng-jdk15.jar") + (string-append (assoc-ref inputs "java-testng") + "/share/java/java-testng.jar")) + (("\\$\\{lib\\}/commons-lang/commons-lang.jar") + (string-append (assoc-ref inputs "java-commons-lang") + "/share/java/commons-lang-" + ,(package-version java-commons-lang) ".jar")) + (("\\$\\{lib\\}/commons-io/commons-io.jar") + (string-append (assoc-ref inputs "java-commons-io") + "/share/java/commons-io-" + ,(package-version java-commons-io) + "-SNAPSHOT.jar")) + ;; Remove dependency on svn + (("<build-info.*") "") + (("\\$\\{revision.number\\}") + ,(number->string revision)) + (("\\$\\{version.number\\}") ,base-version)) + ;; Remove dependency on classycle + (substitute* "../build_resources/ant/build-common.xml" + (("<taskdef name=\"dependency-checker.*") "") + (("classname=\"classycle.*") "") + (("classpath=\"\\$\\{lib\\}/classycle.*") "")) + #t)) + ;; A few tests fail because of the lack of a proper /etc/groups and + ;; /etc/passwd file in the build container. + (add-after 'unpack 'disable-broken-tests + (lambda _ + (substitute* "sourceTest/java/ch/systemsx/cisd/base/AllTests.java" + (("Unix.isOperational\\(\\)") "false")) + #t)) + ;; These decorators are almost useless and pull in an unpackaged + ;; dependency. + (add-after 'unpack 'remove-useless-decorators + (lambda _ + (substitute* "source/java/ch/systemsx/cisd/base/unix/Unix.java" + (("@Private") "") + (("import ch.rinn.restrictions.Private;") "")) + (substitute* "sourceTest/java/ch/systemsx/cisd/base/unix/UnixTests.java" + (("@Friend.*") "") + (("import ch.rinn.restrictions.Friend;") "")) + #t)) + (add-before 'configure 'build-native-code + (lambda* (#:key inputs #:allow-other-keys) + (let ((jdk (assoc-ref inputs "jdk")) + (dir ,(match (%current-system) + ("i686-linux" + "i386-Linux") + ((or "armhf-linux" "aarch64-linux") + "arm-Linux") + ((or "x86_64-linux") + "amd64-Linux") + (_ "unknown-Linux")))) + (with-directory-excursion "source/c" + (invoke "gcc" "-shared" "-O3" "-fPIC" "unix.c" + (string-append "-I" jdk "/include") + (string-append "-I" jdk "/include/linux") + "-o" "libunix.so") + (invoke "gcc" "-shared" "-O3" "-fPIC" + "-DMACHINE_BYTE_ORDER=1" + "copyCommon.c" + "copyByteChar.c" + "copyByteDouble.c" + "copyByteFloat.c" + "copyByteInt.c" + "copyByteLong.c" + "copyByteShort.c" + (string-append "-I" jdk "/include") + (string-append "-I" jdk "/include/linux") + "-o" "libnativedata.so")) + (install-file "source/c/libunix.so" + (string-append "libs/native/unix/" dir)) + (install-file "source/c/libnativedata.so" + (string-append "libs/native/nativedata/" dir)) + #t))) + ;; In the "check" phase we only build the test executable. + (add-after 'check 'run-tests + (lambda _ + (invoke "java" "-jar" "targets/dist/sis-base-test.jar") + (delete-file "targets/dist/sis-base-test.jar") + #t)) + (replace 'install (install-jars "targets/dist"))))) + (native-inputs + `(("jdk" ,icedtea-8) + ("java-commons-lang" ,java-commons-lang) + ("java-commons-io" ,java-commons-io) + ("java-testng" ,java-testng) + ("build-resources" + ,(origin + (method svn-fetch) + (uri (svn-reference + (url (string-append "http://svnsis.ethz.ch/repos/cisd/" + "base/tags/release/" + (version-major+minor base-version) + ".x/" base-version + "/build_resources/")) + (revision revision))) + (sha256 + (base32 + "0b6335gkm4x895rac6kfg9d3rpq0sy19ph4zpg2gyw6asfsisjhk")))))) + (home-page "http://svnsis.ethz.ch") + (synopsis "Utility classes for libraries from ETH Zurich") + (description "This library supplies some utility classes needed for +libraries from the SIS division at ETH Zurich like jHDF5.") + ;; The C sources are under a non-copyleft license, which looks like a + ;; variant of the BSD licenses. The whole package is under the ASL2.0. + (license (list license:asl2.0 + (license:non-copyleft "file://source/c/COPYING")))))) + +(define-public java-cisd-args4j + (let ((revision 39162) + (base-version "9.11.2")) + (package + (name "java-cisd-args4j") + (version (string-append base-version "-" (number->string revision))) + (source (origin + (method svn-fetch) + (uri (svn-reference + (url (string-append "http://svnsis.ethz.ch/repos/cisd/" + "args4j/tags/release/" + (version-major+minor base-version) + ".x/" base-version "/args4j/")) + (revision revision))) + (file-name (string-append "java-cisd-args4j-" version "-checkout")) + (sha256 + (base32 + "0hhqznjaivq7ips7mkwas78z42s6djsm20rrs7g1zd59rcsakxn2")))) + (build-system ant-build-system) + (arguments + `(#:make-flags '("-file" "build/build.xml") + #:tests? #f ; there are no tests + ;; There are weird build failures with JDK8, such as: "The type + ;; java.io.ObjectInputStream cannot be resolved. It is indirectly + ;; referenced from required .class files" + #:jdk ,icedtea-7 + #:modules ((guix build ant-build-system) + (guix build utils) + (guix build java-utils) + (sxml simple) + (sxml transform) + (sxml xpath)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'unpack-build-resources + (lambda* (#:key inputs #:allow-other-keys) + (mkdir-p "../build_resources") + (invoke "tar" "xf" (assoc-ref inputs "build-resources") + "-C" "../build_resources" + "--strip-components=1") + (mkdir-p "../build_resources/lib") + #t)) + (add-after 'unpack-build-resources 'fix-dependencies + (lambda* (#:key inputs #:allow-other-keys) + ;; FIXME: There should be a more convenient abstraction for + ;; editing XML files. + (with-directory-excursion "../build_resources/ant/" + (chmod "build-common.xml" #o664) + (call-with-output-file "build-common.xml.new" + (lambda (port) + (sxml->xml + (pre-post-order + (with-input-from-file "build-common.xml" + (lambda _ (xml->sxml #:trim-whitespace? #t))) + `(;; Remove dependency on classycle and custom ant tasks + (taskdef . ,(lambda (tag . kids) + (let ((name ((sxpath '(name *text*)) kids))) + (if (or (member "build-info" name) + (member "dependency-checker" name) + (member "build-java-subprojects" name) + (member "project-classpath" name)) + '() ; skip + `(,tag ,@kids))))) + (typedef . ,(lambda (tag . kids) + (let ((name ((sxpath '(name *text*)) kids))) + (if (member "recursive-jar" name) + '() ; skip + `(,tag ,@kids))))) + (build-java-subprojects . ,(lambda _ '())) + ;; Ignore everything else + (*default* . ,(lambda (tag . kids) `(,tag ,@kids))) + (*text* . ,(lambda (_ txt) txt)))) + port))) + (rename-file "build-common.xml.new" "build-common.xml")) + (substitute* "build/build.xml" + (("\\$\\{lib\\}/cisd-base/cisd-base.jar") + (string-append (assoc-ref inputs "java-cisd-base") + "/share/java/sis-base.jar")) + ;; Remove dependency on svn + (("<build-info.*") "") + (("\\$\\{revision.number\\}") + ,(number->string revision)) + (("\\$\\{version.number\\}") ,base-version) + ;; Don't use custom ant tasks. + (("recursive-jar") "jar") + (("<project-classpath.*") "")) + #t)) + (replace 'install (install-jars "targets/dist"))))) + (inputs + `(("java-cisd-base" ,java-cisd-base))) + (native-inputs + `(("ecj" ,java-ecj-3.5) + ("build-resources" + ,(origin + (method svn-fetch) + (uri (svn-reference + (url (string-append "http://svnsis.ethz.ch/repos/cisd/" + "args4j/tags/release/" + (version-major+minor base-version) + ".x/" base-version + "/build_resources/")) + (revision revision))) + (sha256 + (base32 + "056cam4k8pll7ass31sy6gwn8g8719njc41yf4l02b0342nilkyf")) + (modules '((guix build utils))) + ;; Delete bundled pre-built jars. + (snippet + '(begin (delete-file-recursively "lib/") #t)))))) + (home-page "http://svnsis.ethz.ch") + (synopsis "Command line parser library") + (description "This package provides a parser for command line arguments.") + (license license:asl2.0)))) + +(define-public java-cisd-jhdf5 + (let ((revision 39162) + (base-version "14.12.6")) + (package + (name "java-cisd-jhdf5") + (version (string-append base-version "-" (number->string revision))) + (source (origin + (method svn-fetch) + (uri (svn-reference + (url (string-append "http://svnsis.ethz.ch/repos/cisd/" + "jhdf5/tags/release/" + (version-major+minor base-version) + ".x/" base-version "/jhdf5/")) + (revision revision))) + (file-name (string-append "java-cisd-jhdf5-" version "-checkout")) + (sha256 + (base32 + "13i17s2hn0q9drdqvp8csy7770p3hdbh9rp30ihln2ldkfawdmz0")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Delete included gradle jar + (delete-file-recursively "gradle/wrapper") + ;; Delete pre-built native libraries + (delete-file-recursively "libs") + #t)))) + (build-system ant-build-system) + (arguments + `(#:make-flags '("-file" "build/build.xml") + #:build-target "jar-all" + #:test-target "jar-test" + #:jdk ,icedtea-8 + #:phases + (modify-phases %standard-phases + ;; Don't erase results from the build phase when building tests. + (add-after 'unpack 'separate-test-target-from-clean + (lambda _ + (substitute* "build/build.xml" + (("\"jar-test\" depends=\"clean, ") + "\"jar-test\" depends=\"")) + #t)) + (add-after 'unpack 'unpack-build-resources + (lambda* (#:key inputs #:allow-other-keys) + (copy-recursively (assoc-ref inputs "build-resources") + "../build_resources") + (delete-file-recursively "../build_resources/lib/") + (mkdir-p "../build_resources/lib") + ;; Remove dependency on classycle + (substitute* "../build_resources/ant/build-common.xml" + (("<taskdef name=\"dependency-checker.*") "") + (("classname=\"classycle.*") "") + (("classpath=\"\\$\\{lib\\}/classycle.*") "")) + ;; Remove dependency on svn + (substitute* "build/build.xml" + (("<build-info.*") "") + (("\\$\\{revision.number\\}") + ,(number->string revision)) + (("\\$\\{version.number\\}") ,base-version)) + #t)) + (add-after 'unpack-build-resources 'fix-dependencies + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "../build_resources/ant/build-common.xml" + (("../libraries/testng/testng-jdk15.jar") + (string-append (assoc-ref inputs "java-testng") + "/share/java/java-testng.jar"))) + (substitute* "build/build.xml" + (("\\$\\{lib\\}/sis-base/sis-base.jar") + (string-append (assoc-ref inputs "java-cisd-base") + "/share/java/sis-base.jar")) + (("\\$\\{lib\\}/cisd-args4j/cisd-args4j.jar") + (string-append (assoc-ref inputs "java-cisd-args4j") + "/share/java/cisd-args4j.jar")) + (("\\$\\{lib\\}/commons-lang/commons-lang.jar") + (string-append (assoc-ref inputs "java-commons-lang") + "/share/java/commons-lang-" + ,(package-version java-commons-lang) ".jar")) + (("\\$\\{lib\\}/commons-io/commons-io.jar") + (string-append (assoc-ref inputs "java-commons-io") + "/share/java/commons-io-" + ,(package-version java-commons-io) + "-SNAPSHOT.jar")) + (("\\$\\{lib\\}/testng/testng-jdk15.jar") + (string-append (assoc-ref inputs "java-testng") + "/share/java/java-testng.jar")) + (("\\$\\{lib\\}/junit4/junit.jar") + (string-append (assoc-ref inputs "java-junit") + "/share/java/junit.jar")) + (("\\$\\{lib\\}/jmock/hamcrest/hamcrest-core.jar") + (string-append (assoc-ref inputs "java-hamcrest-core") + "/share/java/hamcrest-core.jar"))) + ;; Remove dependency on ch.rinn.restrictions + (with-directory-excursion "source/java/ch/systemsx/cisd/hdf5/" + (substitute* '("BitSetConversionUtils.java" + "HDF5Utils.java") + (("import ch.rinn.restrictions.Private;") "") + (("@Private") ""))) + (with-directory-excursion "sourceTest/java/ch/systemsx/cisd/hdf5/" + (substitute* '("BitSetConversionTest.java" + "h5ar/HDF5ArchiverTest.java") + (("import ch.rinn.restrictions.Friend;") "") + (("@Friend.*") "")) + ;; Remove leftovers from removing @Friend + (substitute* "h5ar/HDF5ArchiverTest.java" + (("\\{ HDF5Archiver.class, IdCache.class, LinkRecord.class \\}\\)") + ""))) + #t)) + (add-before 'configure 'build-native-library + (lambda* (#:key inputs #:allow-other-keys) + (let ((jdk (assoc-ref inputs "jdk")) + (hdf5 (assoc-ref inputs "hdf5")) + (dir ,(match (%current-system) + ("i686-linux" + "i386-Linux") + ((or "armhf-linux" "aarch64-linux") + "arm-Linux") + ((or "x86_64-linux") + "amd64-Linux") + (_ "unknown-Linux")))) + (with-directory-excursion "source/c" + (apply invoke `("gcc" "-shared" "-O3" + "-fPIC" + "-Wl,--exclude-libs,ALL" + ,@(find-files "jhdf5" "\\.c$") + ,@(find-files "hdf-java" "\\.c$") + ,(string-append "-I" hdf5 "/include") + ,(string-append "-I" jdk "/include") + ,(string-append "-I" jdk "/include/linux") + ,(string-append hdf5 "/lib/libhdf5.a") + "-o" "libjhdf5.so" "-lz"))) + (install-file "source/c/libjhdf5.so" + (string-append "libs/native/jhdf5/" dir)) + #t))) + ;; In the "check" phase we only build the test executable. + (add-after 'check 'run-tests + (lambda _ + (invoke "java" "-jar" "targets/dist/sis-jhdf5-test.jar") + (delete-file "targets/dist/sis-jhdf5-test.jar") + #t)) + (replace 'install + (install-jars "targets/dist"))))) + (inputs + `(("java-cisd-base" ,java-cisd-base) + ("java-cisd-args4j" ,java-cisd-args4j) + ("java-commons-lang" ,java-commons-lang) + ("java-commons-io" ,java-commons-io) + ("hdf5" ,hdf5) + ("zlib" ,zlib))) + (native-inputs + `(("jdk" ,icedtea-8) + ("java-testng" ,java-testng) + ("java-junit" ,java-junit) + ("java-jmock" ,java-jmock) + ("java-hamcrest-core" ,java-hamcrest-core) + ("build-resources" + ,(origin + (method svn-fetch) + (uri (svn-reference + (url (string-append "http://svnsis.ethz.ch/repos/cisd/" + "jhdf5/tags/release/" + (version-major+minor base-version) + ".x/" base-version + "/build_resources/")) + (revision revision))) + (sha256 + (base32 + "0b6335gkm4x895rac6kfg9d3rpq0sy19ph4zpg2gyw6asfsisjhk")))))) + (home-page "https://wiki-bsse.ethz.ch/display/JHDF5/") + (synopsis "Java binding for HDF5") + (description "JHDF5 is a high-level API in Java for reading and writing +HDF5 files, building on the libraries provided by the HDF Group.") + ;; The C sources are under a non-copyleft license, which looks like a + ;; variant of the BSD licenses. The whole package is under the ASL2.0. + (license (list license:asl2.0 + (license:non-copyleft "file://source/c/COPYING")))))) + (define-public java-classpathx-servletapi (package (name "java-classpathx-servletapi") @@ -2480,7 +3011,7 @@ mechanism of Java. It is especially useful for dynamic loading of application components.") (license license:asl2.0))) -(define-public java-plexus-container-default-bootstrap +(define java-plexus-container-default-bootstrap (package (name "java-plexus-container-default-bootstrap") (version "1.7.1") @@ -2657,6 +3188,418 @@ archives (jar).") `(("archiver" ,java-plexus-archiver) ("hamcrest" ,java-hamcrest-core))))) +(define-public java-plexus-component-annotations + (package + (inherit java-plexus-container-default) + (name "java-plexus-component-annotations") + (arguments + `(#:jar-name "plexus-component-annotations.jar" + #:source-dir "plexus-component-annotations/src/main/java" + #:tests? #f)); no tests + (inputs '()) + (native-inputs '()) + (synopsis "Plexus descriptors generator") + (description "This package is a Maven plugin to generate Plexus descriptors +from source tags and class annotations."))) + +(define-public java-plexus-cipher + (package + (name "java-plexus-cipher") + (version "1.7") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/codehaus-plexus/plexus-cipher" + "/archive/plexus-cipher-" version ".tar.gz")) + (sha256 + (base32 + "1j3r8xzlxlk340snkjp6lk2ilkxlkn8qavsfiq01f43xmvv8ymk3")))) + (build-system ant-build-system) + (arguments + `(#:jar-name "plexus-cipher.jar" + #:source-dir "src/main/java" + #:jdk ,icedtea-8 + #:tests? #f; FIXME: requires sisu-inject-bean + #:phases + (modify-phases %standard-phases + (add-before 'build 'copy-resources + (lambda _ + (copy-recursively "src/main/resources" "build/classes") + (mkdir-p "build/classes/META-INF/sisu") + (with-output-to-file "build/classes/META-INF/sisu/javax.inject.Named" + (lambda _ + (display "org.sonatype.plexus.components.cipher.DefaultPlexusCipher\n"))) + #t))))) + (inputs + `(("java-cdi-api" ,java-cdi-api) + ("java-javax-inject" ,java-javax-inject))) + (home-page "https://github.com/sonatype/plexus-cipher") + (synopsis "Encryption/decryption Component") + (description "Plexus-cipher contains a component to deal with encryption +and decryption.") + (license license:asl2.0))) + +(define-public java-plexus-compiler-api + (package + (name "java-plexus-compiler-api") + (version "2.8.2") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/codehaus-plexus/plexus-compiler" + "/archive/plexus-compiler-" version ".tar.gz")) + (sha256 + (base32 + "0g3x26pymcdnfnwv2a1i57pd5s26f5zqfi1rdy98z1bn01klx25k")))) + (build-system ant-build-system) + (arguments + `(#:jar-name "plexus-compiler-api.jar" + #:source-dir "plexus-compiler-api/src/main/java" + #:jdk ,icedtea-8 + #:test-dir "plexus-compiler-api/src/test")) + (inputs + `(("java-plexus-container-default" ,java-plexus-container-default) + ("java-plexus-util" ,java-plexus-utils))) + (native-inputs + `(("java-junit" ,java-junit))) + (home-page "https://github.com/codehaus-plexus/plexus-compiler") + (synopsis "Plexus Compilers component's API to manipulate compilers") + (description "This package contains the API used by components to manipulate +compilers.") + (license (list license:asl2.0 + license:expat)))) + +(define-public java-plexus-compiler-javac + (package + (inherit java-plexus-compiler-api) + (name "java-plexus-compiler-javac") + (arguments + `(#:jar-name "plexus-compiler-javac.jar" + #:source-dir "plexus-compilers/plexus-compiler-javac/src/main/java" + #:jdk ,icedtea-8 + #:tests? #f; depends on compiler-test -> maven-core -> ... -> this package. + #:test-dir "plexus-compilers/plexus-compiler-javac/src/test")) + (inputs + `(("java-plexus-compiler-api" ,java-plexus-compiler-api) + ("java-plexus-utils" ,java-plexus-utils) + ("java-plexus-container-default" ,java-plexus-container-default))) + (native-inputs + `(("java-junit" ,java-junit))) + (synopsis "Javac Compiler support for Plexus Compiler component") + (description "This package contains the Javac Compiler support for Plexus +Compiler component."))) + +(define-public java-plexus-sec-dispatcher + (package + (name "java-plexus-sec-dispatcher") + (version "1.4") ;; Newest release listed at the Maven Central Repository. + (source (origin + ;; This project doesn't tag releases or publish tarballs, so we take + ;; the "prepare release plexus-sec-dispatcher-1.4" git commit. + (method url-fetch) + (uri (string-append "https://github.com/sonatype/plexus-sec-dispatcher/" + "archive/7db8f88048.tar.gz")) + (sha256 + (base32 + "1smfrk4n7xbrsxpxcp2j4i0j8q86j73w0w6xg7qz83dp6dagdjgp")) + (file-name (string-append name "-" version ".tar.gz")))) + (arguments + `(#:jar-name "plexus-sec-dispatcher.jar" + #:source-dir "src/main/java" + #:jdk ,icedtea-8 + #:phases + (modify-phases %standard-phases + (add-before 'build 'generate-models + (lambda* (#:key inputs #:allow-other-keys) + (define (modello-single-mode file version mode) + (zero? (system* "java" + "org.codehaus.modello.ModelloCli" + file mode "src/main/java" version + "false" "true"))) + (let ((file "src/main/mdo/settings-security.mdo")) + (and + (modello-single-mode file "1.0.0" "java") + (modello-single-mode file "1.0.0" "xpp3-reader") + (modello-single-mode file "1.0.0" "xpp3-writer"))))) + (add-before 'build 'generate-components.xml + (lambda _ + (mkdir-p "build/classes/META-INF/plexus") + (with-output-to-file "build/classes/META-INF/plexus/components.xml" + (lambda _ + (display + "<component-set>\n + <components>\n + <component>\n + <role>org.sonatype.plexus.components.sec.dispatcher.SecDispatcher</role>\n + <role-hint>default</role-hint>\n + <implementation>org.sonatype.plexus.components.sec.dispatcher.DefaultSecDispatcher</implementation>\n + <description></description>\n + <requirements>\n + <requirement>\n + <role>org.sonatype.plexus.components.cipher.PlexusCipher</role>\n + <field-name>_cipher</field-name>\n + </requirement>\n + <requirement>\n + <role>org.sonatype.plexus.components.sec.dispatcher.PasswordDecryptor</role>\n + <field-name>_decryptors</field-name>\n + </requirement>\n + </requirements>\n + <configuration>\n + <_configuration-file>~/.settings-security.xml</_configuration-file>\n + </configuration>\n + </component>\n + </components>\n +</component-set>\n"))))) + (add-before 'check 'fix-paths + (lambda _ + (copy-recursively "src/test/resources" "target")))))) + (inputs + `(("java-plexus-cipher" ,java-plexus-cipher))) + (native-inputs + `(("java-modello-core" ,java-modello-core) + ;; for modello: + ("java-plexus-container-default" ,java-plexus-container-default) + ("java-plexus-classworlds" ,java-plexus-classworlds) + ("java-plexus-utils" ,java-plexus-utils) + ("java-guava" ,java-guava) + ("java-geronimo-xbean-reflect" ,java-geronimo-xbean-reflect) + ("java-sisu-build-api" ,java-sisu-build-api) + ;; modello plugins: + ("java-modellop-plugins-java" ,java-modello-plugins-java) + ("java-modellop-plugins-xml" ,java-modello-plugins-xml) + ("java-modellop-plugins-xpp3" ,java-modello-plugins-xpp3) + ;; for tests + ("java-junit" ,java-junit))) + (build-system ant-build-system) + (home-page "https://github.com/sonatype/plexus-sec-dispatcher") + (synopsis "Plexus Security Dispatcher Component") + (description "This package is the Plexus Security Dispatcher Component. +This component decrypts a string passed to it.") + (license license:asl2.0))) + +(define-public java-sisu-build-api + (package + (name "java-sisu-build-api") + (version "0.0.7") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/sonatype/sisu-build-api/" + "archive/plexus-build-api-" version ".tar.gz")) + (sha256 + (base32 + "1c3rrpma3x634xp2rm2p5iskfhzdyc7qfbhjzr70agrl1jwghgy2")))) + (build-system ant-build-system) + (arguments + `(#:jar-name "sisu-build-api.jar" + #:source-dir "src/main/java" + #:jdk ,icedtea-8 + #:tests? #f; FIXME: how to run the tests? + #:phases + (modify-phases %standard-phases + (add-before 'build 'copy-resources + (lambda _ + (copy-recursively "src/main/resources" "build/classes") + (substitute* (find-files "build/classes") + (("\\$\\{project.version\\}") ,version)) + #t)) + (add-before 'build 'generate-plexus-compontent + (lambda _ + (mkdir-p "build/classes/META-INF/plexus") + ;; This file is required for plexus to inject this package. + ;; FIXME: how is it generated? + (with-output-to-file "build/classes/META-INF/plexus/components.xml" + (lambda _ + (display + "<component-set>\n + <components>\n + <component>\n + <role>org.sonatype.plexus.build.incremental.BuildContext</role>\n + <role-hint>default</role-hint>\n + <implementation>org.sonatype.plexus.build.incremental.DefaultBuildContext</implementation>\n + <description>Filesystem based non-incremental build context implementation\n +which behaves as if all files were just created.</description>\n + </component>\n + </components>\n +</component-set>\n"))) + #t))))) + (inputs + `(("java-plexus-utils" ,java-plexus-utils) + ("java-plexus-container-default" ,java-plexus-container-default))) + (home-page "https://github.com/sonatype/sisu-build-api/") + (synopsis "Base build API for maven") + (description "This package contains the base build API for maven and +a default implementation of it. This API is about scanning files in a +project and determining what files need to be rebuilt.") + (license license:asl2.0))) + +(define-public java-modello-core + (package + (name "java-modello-core") + (version "1.9.1") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/codehaus-plexus/modello" + "/archive/modello-" version ".tar.gz")) + (sha256 + (base32 + "0l2pvns8pmlrmjm3iknp7gpg3654y1m8qhy55b19sdwdchdcyxfh")))) + (build-system ant-build-system) + (arguments + `(#:jar-name "modello-core.jar" + #:source-dir "modello-core/src/main/java" + #:test-dir "modello-core/src/test" + #:main-class "org.codehaus.modello.ModelloCli" + #:jdk ,icedtea-8 + #:phases + (modify-phases %standard-phases + (add-before 'build 'copy-resources + (lambda _ + (mkdir-p "build/classes/META-INF/plexus") + (copy-file "modello-core/src/main/resources/META-INF/plexus/components.xml" + "build/classes/META-INF/plexus/components.xml") + #t)) + (add-before 'check 'fix-tests + (lambda _ + (with-directory-excursion "modello-core/src/test/java/org/codehaus" + (substitute* '("modello/core/DefaultModelloCoreTest.java" + "modello/core/io/ModelReaderTest.java") + (("src/test") "modello-core/src/test"))) + #t))))) + (inputs + `(("java-plexus-utils" ,java-plexus-utils) + ("java-plexus-container-default" ,java-plexus-container-default) + ("java-sisu-build-api" ,java-sisu-build-api))) + (native-inputs + `(("java-junit" ,java-junit) + ("java-plexus-classworlds" ,java-plexus-classworlds) + ("java-geronimo-xbean-reflect" ,java-geronimo-xbean-reflect) + ("java-guava" ,java-guava))) + (home-page "http://codehaus-plexus.github.io/modello/") + (synopsis "Framework for code generation from a simple model") + (description "Modello is a framework for code generation from a simple model. + +Modello generates code from a simple model format: based on a plugin +architecture, various types of code and descriptors can be generated from the +single model, including Java POJOs, XML/JSON/YAML marshallers/unmarshallers, +XSD and documentation.") + (license (list + license:expat + ;; Although this package uses only files licensed under expat, + ;; other parts of the source are licensed under different + ;; licenses. We include them to be inherited by other packages. + license:asl2.0 + ;; Some files in modello-plugin-java are licensed under a + ;; 5-clause BSD license. + (license:non-copyleft + (string-append "file:///modello-plugins/modello-plugin-java/" + "src/main/java/org/codehaus/modello/plugin/" + "java/javasource/JNaming.java")))))) + +(define-public java-modello-plugins-java + (package + (inherit java-modello-core) + (name "java-modello-plugins-java") + (arguments + `(#:jar-name "modello-plugins-java.jar" + #:source-dir "modello-plugins/modello-plugin-java/src/main/java" + #:test-dir "modello-plugins/modello-plugin-java/src/test" + #:jdk ,icedtea-8 + #:tests? #f; requires maven-model, which depends on this package + #:phases + (modify-phases %standard-phases + (add-before 'build 'copy-resources + (lambda _ + (mkdir-p "build/classes") + (copy-recursively "modello-plugins/modello-plugin-java/src/main/resources" + "build/classes") + #t))))) + (inputs + `(("java-modello-core" ,java-modello-core) + ,@(package-inputs java-modello-core))) + (synopsis "Modello Java Plugin") + (description "Modello Java Plugin generates Java objects for the model."))) + +(define-public java-modello-plugins-xml + (package + (inherit java-modello-core) + (name "java-modello-plugins-xml") + (arguments + `(#:jar-name "modello-plugins-xml.jar" + #:source-dir "modello-plugins/modello-plugin-xml/src/main/java" + #:test-dir "modello-plugins/modello-plugin-xml/src/test" + #:jdk ,icedtea-8 + #:phases + (modify-phases %standard-phases + (add-before 'build 'copy-resources + (lambda _ + (mkdir-p "build/classes") + (copy-recursively + "modello-plugins/modello-plugin-xml/src/main/resources" + "build/classes") + #t)) + (add-before 'check 'fix-paths + (lambda _ + (with-directory-excursion "modello-plugins/modello-plugin-xml/src/test" + (substitute* + "java/org/codehaus/modello/plugins/xml/XmlModelloPluginTest.java" + (("src/test") "modello-plugins/modello-plugin-xml/src/test")))))))) + (inputs + `(("java-modello-core" ,java-modello-core) + ("java-modello-plugins-java" ,java-modello-plugins-java) + ,@(package-inputs java-modello-core))) + (synopsis "Modello XML Plugin") + (description "Modello XML Plugin contains shared code for every plugins +working on XML representation of the model."))) + +(define-public java-modello-test + (package + (inherit java-modello-core) + (name "java-modello-test") + (arguments + `(#:jar-name "modello-test.jar" + #:source-dir "modello-test/src/main/java" + #:tests? #f; no tests + #:jdk ,icedtea-8)) + (inputs + `(("java-plexus-utils" ,java-plexus-utils) + ("java-plexus-compiler-api" ,java-plexus-compiler-api) + ("java-plexus-compiler-javac" ,java-plexus-compiler-javac) + ("java-plexus-container-default" ,java-plexus-container-default))) + (synopsis "Modello test package") + (description "The modello test package contains the basis to create +Modello generator unit-tests, including sample models and xml files to test +every feature for every plugin."))) + +(define-public java-modello-plugins-xpp3 + (package + (inherit java-modello-core) + (name "java-modello-plugins-xpp3") + (arguments + `(#:jar-name "modello-plugins-xpp3.jar" + #:source-dir "modello-plugins/modello-plugin-xpp3/src/main/java" + #:test-dir "modello-plugins/modello-plugin-xpp3/src/test" + ;; One of the test dependencies is maven-model which depends on this package. + #:tests? #f + #:jdk ,icedtea-8 + #:phases + (modify-phases %standard-phases + (add-before 'build 'copy-resources + (lambda _ + (mkdir-p "build/classes") + (copy-recursively "modello-plugins/modello-plugin-xpp3/src/main/resources" + "build/classes") + #t))))) + (inputs + `(("java-modello-core" ,java-modello-core) + ("java-modello-plugins-java" ,java-modello-plugins-java) + ("java-modello-plugins-xml" ,java-modello-plugins-xml) + ,@(package-inputs java-modello-core))) + (native-inputs + `(("java-xmlunit" ,java-xmlunit) + ("java-modello-test" ,java-modello-test) + ,@(package-native-inputs java-modello-core))) + (synopsis "Modello XPP3 Plugin") + (description "The modello XPP3 plugin generates XML readers and writers based +on the XPP3 API (XML Pull Parser)."))) + (define-public java-asm (package (name "java-asm") @@ -2940,39 +3883,30 @@ The jMock library (package (inherit java-hamcrest-core) (name "java-hamcrest-all") (arguments - (substitute-keyword-arguments (package-arguments java-hamcrest-core) - ;; FIXME: a unit test fails because org.hamcrest.SelfDescribing is not - ;; found, although it is part of the hamcrest-core library that has - ;; just been built. - ;; - ;; Fixing this one test is insufficient, though, and upstream confirmed - ;; that the latest hamcrest release fails its unit tests when built - ;; with Java 7. See https://github.com/hamcrest/JavaHamcrest/issues/30 - ((#:tests? _) #f) - ((#:build-target _) "bigjar") - ((#:phases phases) - `(modify-phases ,phases - ;; Some build targets override the classpath, so we need to patch - ;; the build.xml to ensure that required dependencies are on the - ;; classpath. - (add-after 'unpack 'patch-classpath-for-integration - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "build.xml" - ((" build/hamcrest-library-\\$\\{version\\}.jar" line) - (string-join - (cons line - (append - (find-files (assoc-ref inputs "java-hamcrest-core") "\\.jar$") - (find-files (assoc-ref inputs "java-junit") "\\.jar$") - (find-files (assoc-ref inputs "java-jmock") "\\.jar$") - (find-files (assoc-ref inputs "java-easymock") "\\.jar$"))) - ";"))) - #t)))))) + `(#:jdk ,icedtea-8 + ,@(substitute-keyword-arguments (package-arguments java-hamcrest-core) + ((#:build-target _) "bigjar") + ((#:phases phases) + `(modify-phases ,phases + ;; Some build targets override the classpath, so we need to patch + ;; the build.xml to ensure that required dependencies are on the + ;; classpath. + (add-after 'unpack 'patch-classpath-for-integration + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "build.xml" + ((" build/hamcrest-library-\\$\\{version\\}.jar" line) + (string-join + (cons line + (append + (find-files (assoc-ref inputs "java-junit") "\\.jar$") + (find-files (assoc-ref inputs "java-jmock") "\\.jar$") + (find-files (assoc-ref inputs "java-easymock") "\\.jar$"))) + ";"))) + #t))))))) (inputs `(("java-junit" ,java-junit) ("java-jmock" ,java-jmock-1) ("java-easymock" ,java-easymock) - ("java-hamcrest-core" ,java-hamcrest-core) ,@(package-inputs java-hamcrest-core))))) (define-public java-jopt-simple @@ -5103,7 +6037,9 @@ tree walking, and translation.") version ".tar.gz")) (sha256 (base32 - "0qgg5vgsm4l1d6dj9pfbaa25dpv2ry2gny8ajy4vvgvfklw97b3m")))) + "0qgg5vgsm4l1d6dj9pfbaa25dpv2ry2gny8ajy4vvgvfklw97b3m")) + (patches + (search-patches "antlr3-3_3-fix-java8-compilation.patch")))) (arguments `(#:jar-name (string-append ,name "-" ,version ".jar") #:source-dir (string-join '("tool/src/main/java" @@ -5185,7 +6121,6 @@ import org.antlr.grammar.v2.ANTLRTreePrinter;")) (define antlr3-3.1 (package (inherit antlr3) - (name "antlr3-3.1") (version "3.1") (source (origin (method url-fetch) @@ -5194,9 +6129,11 @@ import org.antlr.grammar.v2.ANTLRTreePrinter;")) version ".tar.gz")) (sha256 (base32 - "0sfimc9cpbgrihz4giyygc8afgpma2c93yqpwb951giriri6x66z")))) + "0sfimc9cpbgrihz4giyygc8afgpma2c93yqpwb951giriri6x66z")) + (patches + (search-patches "antlr3-3_1-fix-java8-compilation.patch")))) (arguments - `(#:jar-name (string-append ,name "-" ,version ".jar") + `(#:jar-name (string-append "antlr3-" ,version ".jar") #:source-dir "src:runtime/Java/src" #:tests? #f #:phases @@ -5228,12 +6165,13 @@ import org.antlr.grammar.v2.ANTLRTreePrinter;")) (for-each (lambda (file) (display file) (newline) - (system* "antlr" "-o" dir (string-append dir file))) + (invoke "antlr" "-o" dir (string-append dir file))) '("antlr.g" "antlr.print.g" "assign.types.g" "buildnfa.g" "define.g"))) (format #t "codegen.g\n") - (system* "antlr" "-o" "src/org/antlr/codegen" - "src/org/antlr/codegen/codegen.g"))) + (invoke "antlr" "-o" "src/org/antlr/codegen" + "src/org/antlr/codegen/codegen.g") + #t)) (add-before 'build 'fix-build-xml (lambda _ (substitute* "build.xml" @@ -6056,7 +6994,8 @@ it manages project dependencies, gives diffs jars, and much more.") ;; packaging. It uses the version referenced in pom.xml. We replace ;; it with our own version. (substitute* "src/test/java/org/ops4j/pax/tinybundles/bnd/BndTest.java" - (("2.4.0.201411031534") "3.4.0"))))))) + (("[0-9][0-9]*\\.[0-9][0-9]*\\.[0-9][0-9]*\\.[0-9][0-9]*") + ,(package-version java-aqute-bndlib)))))))) (inputs `(("lang" ,java-ops4j-base-lang) ("io" ,java-ops4j-base-io) @@ -6365,6 +7304,7 @@ configuration.") (method url-fetch) (uri (string-append "https://bitbucket.org/asomov/snakeyaml/get/v" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 "0rf5ha6w0waz50jz2479jsrbgmd0dnx0gs337m126j5z7zlmg7mg")))) @@ -6956,7 +7896,7 @@ those in Perl and JavaScript.") (define-public java-testng (package (name "java-testng") - (version "6.14.2") + (version "6.14.3") (source (origin (method git-fetch) (uri (git-reference @@ -6965,7 +7905,7 @@ those in Perl and JavaScript.") (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "0ngj88dpbqqdx9084cmiasmn9q3v5dgx45qbvxpip47nxc5x14xy")))) + "0y6vq30i5g276kw0v2bhbvci22ijg7ax49ap2611yqlhbs4d6dqv")))) (build-system ant-build-system) (arguments `(#:jdk ,icedtea-8; java.util.function @@ -7030,54 +7970,56 @@ to use.") (license license:asl2.0))) (define-public java-jnacl - (package - (name "java-jnacl") - (version "0.1.0") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/neilalexander/jnacl") - (commit "40c322e0a42637ab17cdf941138eeaf2494055f8"))) - (sha256 - (base32 - "1pspnmp44q61a2q4bpslpxw86rfn8s5l0xgvyrikqgdvg7ypx597")))) - (build-system ant-build-system) - (arguments - `(#:jar-name "java-jnacl.jar" - #:source-dir "src/main/java" - #:jdk ,icedtea-8 - #:phases - (modify-phases %standard-phases - (add-before 'build 'fix-tests - (lambda _ - (substitute* "src/test/java/com/neilalexander/jnacl/NaClTest.java" - (("assertions.Assertions") "assertions.api.Assertions")) - (substitute* "src/test/java/com/neilalexander/jnacl/NaclSecretBoxTest.java" - (("assertions.Assertions") "assertions.api.Assertions")) - #t)) - (replace 'check - (lambda _ - (system* "ant" "compile-tests") - (and - (zero? (system* "java" "-cp" (string-append (getenv "CLASSPATH") - ":build/classes" - ":build/test-classes") - "org.testng.TestNG" "-testclass" - "build/test-classes/com/neilalexander/jnacl/NaclSecretBoxTest.class")) - (zero? (system* "java" "-cp" (string-append (getenv "CLASSPATH") - ":build/classes" - ":build/test-classes") - "org.testng.TestNG" "-testclass" - "build/test-classes/com/neilalexander/jnacl/NaClTest.class")))))))) - (native-inputs - `(("java-testng" ,java-testng) - ("java-fest-util" ,java-fest-util) - ("java-fest-assert" ,java-fest-assert))) - (home-page "https://github.com/neilalexander/jnacl") - (synopsis "Java implementation of NaCl") - (description "Pure Java implementation of the NaCl: Networking and + (let ((commit "094e819afdd63ea81a499b3bcb42a271006bebd9") + (revision "2")) + (package + (name "java-jnacl") + (version (string-append "0.1.0-" revision "." (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/neilalexander/jnacl.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1d6g6xhn83byv5943n7935wwjsk0ibk0qdvqgr699qqgqqmwisbb")))) + (build-system ant-build-system) + (arguments + `(#:jar-name "jnacl.jar" + #:source-dir "src/main/java" + #:jdk ,icedtea-8 + #:phases + (modify-phases %standard-phases + (add-before 'build 'fix-tests + (lambda _ + (substitute* '("src/test/java/com/neilalexander/jnacl/NaClTest.java" + "src/test/java/com/neilalexander/jnacl/NaclSecretBoxTest.java") + (("assertions.Assertions") "assertions.api.Assertions")) + #t)) + (replace 'check + (lambda _ + (invoke "ant" "compile-tests") + (invoke "java" "-cp" (string-append (getenv "CLASSPATH") + ":build/classes" + ":build/test-classes") + "org.testng.TestNG" "-testclass" + "build/test-classes/com/neilalexander/jnacl/NaclSecretBoxTest.class") + (invoke "java" "-cp" (string-append (getenv "CLASSPATH") + ":build/classes" + ":build/test-classes") + "org.testng.TestNG" "-testclass" + "build/test-classes/com/neilalexander/jnacl/NaClTest.class") + #t))))) + (native-inputs + `(("java-testng" ,java-testng) + ("java-fest-util" ,java-fest-util) + ("java-fest-assert" ,java-fest-assert))) + (home-page "https://github.com/neilalexander/jnacl") + (synopsis "Java implementation of NaCl") + (description "Pure Java implementation of the NaCl: Networking and Cryptography library.") - (license license:mpl2.0))) + (license license:bsd-2)))) (define-public java-mvel2 (package @@ -7172,8 +8114,9 @@ configuration and string construction.") (add-before 'build 'run-javacc (lambda _ (with-directory-excursion "src/main/java/org/apache/commons/jexl2/parser/" - (and (zero? (system* "java" "jjtree" "Parser.jjt")) - (zero? (system* "java" "javacc" "Parser.jj"))))))))) + (invoke "java" "jjtree" "Parser.jjt") + (invoke "java" "javacc" "Parser.jj")) + #t))))) (inputs `(("java-commons-logging-minimal" ,java-commons-logging-minimal))) (native-inputs @@ -7213,7 +8156,8 @@ by technical operatives or consultants working with enterprise platforms.") (add-before 'configure 'generate-source (lambda _ (with-directory-excursion "src/build/source_templates" - (zero? (system* "mvel2" "../gen_sources.mvel" "../../java")))))))) + (invoke "mvel2" "../gen_sources.mvel" "../../java")) + #t))))) (native-inputs `(("mvel" ,java-mvel2))) (home-page "https://jpountz.github.io/lz4-java") @@ -7243,7 +8187,8 @@ algorithms and xxHash hashing algorithm.") (lambda _ (mkdir-p "src") (with-directory-excursion "src" - (zero? (system* "unzip" "../src.zip")))))))) + (invoke "unzip" "../src.zip")) + #t))))) (native-inputs `(("unzip" ,unzip) ("junit" ,java-junit))) @@ -7274,7 +8219,8 @@ for the Java programming language.") (lambda _ (mkdir-p "src") (with-directory-excursion "src" - (zero? (system* "unzip" "../src.zip")))))))) + (invoke "unzip" "../src.zip")) + #t))))) (native-inputs `(("unzip" ,unzip) ("junit" ,java-junit))) @@ -7631,7 +8577,8 @@ protocol-independent framework to build mail and messaging applications.") (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "1gxkp7lv2ahymgrqdw94ncq54bmp4m4sw5m1x9gkp7l5bxn0xsyj")))) + "1gxkp7lv2ahymgrqdw94ncq54bmp4m4sw5m1x9gkp7l5bxn0xsyj")) + (patches (search-patches "java-jeromq-fix-tests.patch")))) (build-system ant-build-system) (arguments `(#:jar-name "java-jeromq.jar" @@ -7645,7 +8592,13 @@ protocol-independent framework to build mail and messaging applications.") ;; Failures "**/DealerSpecTest.java" "**/CustomDecoderTest.java" - "**/CustomEncoderTest.java"))) + "**/CustomEncoderTest.java" + "**/ConnectRidTest.java" + "**/ReqSpecTest.java" + "**/PushPullSpecTest.java" + "**/PubSubHwmTest.java" + "**/RouterSpecTest.java" + "**/ProxyTest.java"))) (inputs `(("java-jnacl" ,java-jnacl))) (native-inputs @@ -7901,26 +8854,23 @@ including pre-existing objects that you do not have source-code of.") (modify-phases %standard-phases (add-before 'build 'build-native (lambda* (#:key inputs #:allow-other-keys) - (with-directory-excursion "hawtjni-generator/src/main/resources/" - (and - (system* "gcc" "-c" "hawtjni.c" "-o" "hawtjni.o" - "-fPIC" "-O2" - (string-append "-I" (assoc-ref inputs "jdk") "/include/linux")) - (system* "gcc" "-c" "hawtjni-callback.c" "-o" "hawtjni-callback.o" - "-fPIC" "-O2" - (string-append "-I" (assoc-ref inputs "jdk") "/include/linux")) - (system* "gcc" "-o" "libhawtjni.so" "-shared" - "hawtjni.o" "hawtjni-callback.o"))))) + (let ((include (string-append "-I" (assoc-ref inputs "jdk") "/include/linux"))) + (with-directory-excursion "hawtjni-generator/src/main/resources/" + (invoke "gcc" "-c" "hawtjni.c" "-o" "hawtjni.o" + "-fPIC" "-O2" include) + (invoke "gcc" "-c" "hawtjni-callback.c" "-o" "hawtjni-callback.o" + "-fPIC" "-O2" include) + (invoke "gcc" "-o" "libhawtjni.so" "-shared" + "hawtjni.o" "hawtjni-callback.o"))) + #t)) (add-after 'install 'install-native (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (lib (string-append out "/lib")) (inc (string-append out "/include"))) - (mkdir-p lib) - (mkdir-p inc) (with-directory-excursion "hawtjni-generator/src/main/resources/" - (copy-file "libhawtjni.so" (string-append lib "/libhawtjni.so")) - (copy-file "hawtjni.h" (string-append inc "/hawtjni.h")))) + (install-file "libhawtjni.so" lib) + (install-file "hawtjni.h" inc))) #t))))) (inputs `(("java-commons-cli" ,java-commons-cli) @@ -7957,14 +8907,14 @@ that is part of the SWT Tools project.") (with-directory-excursion "src/main/native-package/src" (substitute* "jansi_ttyname.c" (("#include \"jansi_.*") "")) - (and - (system* "gcc" "-c" "jansi_ttyname.c" "-o" "jansi_ttyname.o" - (string-append "-I" (assoc-ref inputs "java-hawtjni") - "/include") - (string-append "-I" (assoc-ref inputs "jdk") - "/include/linux") - "-fPIC" "-O2") - (system* "gcc" "-o" "libjansi.so" "-shared" "jansi_ttyname.o"))))) + (invoke "gcc" "-c" "jansi_ttyname.c" "-o" "jansi_ttyname.o" + (string-append "-I" (assoc-ref inputs "java-hawtjni") + "/include") + (string-append "-I" (assoc-ref inputs "jdk") + "/include/linux") + "-fPIC" "-O2") + (invoke "gcc" "-o" "libjansi.so" "-shared" "jansi_ttyname.o") + #t))) (add-before 'build 'install-native (lambda _ (let ((dir (string-append "build/classes/META-INF/native/" @@ -7977,7 +8927,6 @@ that is part of the SWT Tools project.") #t)) (add-after 'install 'install-native (lambda* (#:key outputs #:allow-other-keys) - (mkdir-p (string-append (assoc-ref outputs "out") "/include")) (install-file "src/main/native-package/src/jansi.h" (string-append (assoc-ref outputs "out") "/include")) #t))))) @@ -7985,8 +8934,9 @@ that is part of the SWT Tools project.") `(("java-hawtjni" ,java-hawtjni))) (home-page "https://fusesource.github.io/jansi/") (synopsis "Native library for jansi") - (description "Java-jansi-native contains the native library for the jansi -frobnication library/framework.") + (description "This package provides the native library for jansi, a small +Java library that allows you to use ANSI escape sequences to format your +console output.") (license license:asl2.0))) (define-public java-jansi @@ -8370,3 +9320,44 @@ against expected outcomes.") ("java-junit" ,java-junit))) (native-inputs `(("java-mockito-1" ,java-mockito-1))))) + +(define-public java-openchart2 + (package + (name "java-openchart2") + (version "1.4.3") + (source (origin + (method url-fetch) + (uri (string-append "http://download.approximatrix.com/openchart2/" + "openchart2-" version ".source.zip")) + (sha256 + (base32 + "1xq96zm5r02n1blja0072jmmsifmxc40lbyfbnmcnr6mw42frh4g")))) + (build-system ant-build-system) + (arguments + `(#:test-target "test" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-junit-errors + (lambda _ + (with-directory-excursion "unittest/src/com/approximatrix/charting/" + (substitute* '("coordsystem/ticklocator/NumericXTickLocatorTest.java" + "coordsystem/ticklocator/NumericYTickLocatorTest.java" + "coordsystem/ticklocator/ObjectXTickLocatorTest.java" + "model/DefaultChartDataModelConstraintsTest.java" + "model/MultiScatterDataModelConstraintsTest.java" + "model/threedimensional/DotPlotDataModelConstraintsTest.java") + (("(assertEquals[^;]+);" before _) + (string-append (string-drop-right before 2) ", 1E-6);")))) + #t)) + (replace 'install (install-jars "."))))) + (native-inputs + `(("unzip" ,unzip) + ("java-junit" ,java-junit) + ("java-hamcrest-core" ,java-hamcrest-core))) + (home-page "http://approximatrix.com/products/openchart2/") + (synopsis "Simple plotting for Java") + (description "Openchart2 provides a simple, yet powerful, interface for +Java programmers to create two-dimensional charts and plots. The library +features an assortment of graph styles, including advanced scatter plots, bar +graphs, and pie charts.") + (license license:lgpl2.1+))) |