diff options
Diffstat (limited to 'gnu/packages/parallel.scm')
| -rw-r--r-- | gnu/packages/parallel.scm | 106 |
1 files changed, 91 insertions, 15 deletions
diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm index 7bd2834e13..e75e902a68 100644 --- a/gnu/packages/parallel.scm +++ b/gnu/packages/parallel.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2013, 2014, 2020 Eric Bavier <bavier@posteo.net> ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org> -;;; Copyright © 2015-2018, 2020-2023 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2015-2018, 2020-2024 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016, 2020, 2021, 2022, 2023 Ricardo Wurmus <rekado@elephly.net> @@ -14,6 +14,7 @@ ;;; Copyright © 2021 Stefan Reichör <stefan@xsteve.at> ;;; Copyright © 2024 Zheng Junjie <873216071@qq.com> ;;; Copyright © 2024 David Elsing <david.elsing@posteo.net> +;;; Copyright © 2024 Romain Garbage <romain.garbage@inria.fr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -51,6 +52,7 @@ #:use-module (gnu packages documentation) #:use-module (gnu packages flex) #:use-module (gnu packages freeipmi) + #:use-module (gnu packages libevent) #:use-module (gnu packages linux) #:use-module (gnu packages maths) #:use-module (gnu packages mpi) @@ -68,14 +70,14 @@ (define-public parallel (package (name "parallel") - (version "20240622") + (version "20240722") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/parallel/parallel-" version ".tar.bz2")) (sha256 - (base32 "1m9qpx6c7b62s1kjp6aj0qfnj3fw2pl72q32bdykqi5x0z4i1qip")) + (base32 "1w2k1s7fmbj7csnmxxzvg07i5vgja1ddhjj6m6z2ibvnyxqm8cy7")) (snippet '(begin (use-modules (guix build utils)) @@ -227,6 +229,7 @@ when jobs finish.") `(,hwloc-2 "lib") json-c linux-pam + openpmix munge numactl readline)) @@ -243,6 +246,14 @@ when jobs finish.") (string-append "--with-json=" #$(this-package-input "json-c")) (string-append "--with-munge=" #$(this-package-input "munge")) + ;; Use PMIx bundled with Open MPI (this is required for Open MPI 5.x). + ;; Note: Older versions that inherit from this package lack the + ;; 'openpmix' dependency. + #$(let ((openmpix (this-package-input "openpmix"))) + (if openmpix + #~(string-append "--with-pmix=" #$openmpix) + "--without-pmix")) + ;; 32-bit support is marked as deprecated and needs to be ;; explicitly enabled. #$@(if (target-64bit?) '() '("--enable-deprecated"))) @@ -304,10 +315,10 @@ by managing a queue of pending work.") (define-public slurm-21.08 (package - (inherit slurm) + (inherit slurm-22.05) (version "21.08.8") (source (origin - (inherit (package-source slurm)) + (inherit (package-source slurm-22.05)) (method url-fetch) (uri (string-append "https://download.schedmd.com/slurm/slurm-" @@ -315,14 +326,19 @@ by managing a queue of pending work.") (patches '()) ;drop 'salloc' patch (sha256 (base32 - "1sjln54idc9rhg8f2nvm38sgs6fncncyzslas8ixy65pqz2hphbf")))))) + "1sjln54idc9rhg8f2nvm38sgs6fncncyzslas8ixy65pqz2hphbf")))) + + ;; This and older versions of slurm have PMIx support but they seem to + ;; require an older version of openpmix. Disable PMIx support. + (inputs (modify-inputs (package-inputs slurm-22.05) + (delete "openpmix"))))) (define-public slurm-20.11 (package - (inherit slurm) + (inherit slurm-21.08) (version "20.11.9") (source (origin - (inherit (package-source slurm)) + (inherit (package-source slurm-21.08)) (method url-fetch) (uri (string-append "https://download.schedmd.com/slurm/slurm-" @@ -334,10 +350,10 @@ by managing a queue of pending work.") (define-public slurm-20.02 (package - (inherit slurm) + (inherit slurm-20.11) (version "20.02.6-1") (source (origin - (inherit (package-source slurm)) + (inherit (package-source slurm-20.11)) (method url-fetch) (uri (string-append "https://download.schedmd.com/slurm/slurm-" @@ -347,7 +363,7 @@ by managing a queue of pending work.") (base32 "0qj4blfymrd2ry2qmb58l3jbr4jwygc3adcfw7my27rippcijlyc")))) (arguments - (substitute-keyword-arguments (package-arguments slurm) + (substitute-keyword-arguments (package-arguments slurm-20.11) ((#:configure-flags flags ''()) #~(append '("CFLAGS=-O2 -g -fcommon" "LDFLAGS=-fcommon") #$flags)))))) @@ -357,7 +373,7 @@ by managing a queue of pending work.") (inherit slurm-20.02) (version "19.05.8") (source (origin - (inherit (package-source slurm)) + (inherit (package-source slurm-20.02)) (method url-fetch) (uri (string-append "https://download.schedmd.com/slurm/slurm-" @@ -370,11 +386,11 @@ by managing a queue of pending work.") ;; Same as Debian 10 (define-public slurm-18.08 (package - (inherit slurm-20.02) + (inherit slurm-19.05) (version "18.08.9") (source (origin - (inherit (package-source slurm)) + (inherit (package-source slurm-20.02)) (uri (string-append "https://download.schedmd.com/slurm/slurm-" version ".tar.bz2")) @@ -554,7 +570,7 @@ obtain information about the CPU being used: supported instruction set, processor name, cache information, and topology information.") ;; On aarch64-linux, there is a bug reported upstream: ;; https://github.com/pytorch/cpuinfo/issues/14 - (supported-systems '("armv7-linux" "i686-linux" "x86_64-linux")) + (supported-systems '("armhf-linux" "i686-linux" "x86_64-linux")) (license license:bsd-2)))) (define-public clog @@ -612,3 +628,63 @@ debug information. "This header-only C++ library provides a portable interface to single-instruction multiple-data (SIMD) intrinsics.") (license license:expat)))) + +(define-public openpmix + (package + (name "openpmix") + (version "4.2.8") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/openpmix/openpmix/releases/download/v" + version "/pmix-" version ".tar.bz2")) + (sha256 + (base32 + "1j9xlhqrrmgjdkwakamn78y5gj756adi53hn25zksgr3is3l5d09")))) + (build-system gnu-build-system) + (arguments + (list #:configure-flags + #~(list (string-append "--with-hwloc=" + (ungexp (this-package-input "hwloc") "lib"))))) + (inputs (list libevent `(,hwloc "lib"))) + (native-inputs (list perl python)) + (synopsis "PMIx library") + (description + "PMIx is an application programming interface standard that provides +libraries and programming models with portable and well-defined access to +commonly needed services in distributed and parallel computing systems.") + (home-page "https://pmix.org/") + ;; The provided license is kind of BSD-style but specific. + (license (license:fsf-free "https://github.com/openpmix/openpmix?tab=License-1-ov-file#License-1-ov-file")))) + +(define-public prrte + (package + (name "prrte") + (version "3.0.6") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/openpmix/prrte/releases/download/v" + version "/prrte-" version ".tar.bz2")) + (sha256 + (base32 + "0wiy0vk37v4db1jgxza8bci0cczcvj34dalzsrlz05dk45zb7dl3")))) + (build-system gnu-build-system) + (arguments + (list #:configure-flags #~(list (string-append "--with-hwloc=" + (assoc-ref %build-inputs "hwloc")) + (string-append "--with-pmix=" #$(this-package-input "openpmix"))))) + (inputs (list libevent + `(,hwloc "lib") + openpmix)) + (native-inputs (list perl)) + (synopsis "PMIx Reference RunTime Environment (PRRTE)") + (description + "The PMIx Reference RunTime Environment is a runtime environment +containing the reference implementation and capable of operating +within a host SMS. The reference RTE therefore provides an easy way of +exploring PMIx capabilities and testing PMIx-based applications +outside of a PMIx-enabled environment.") + (home-page "https://openpmix.github.io/") + ;; The provided license is kind of BSD-style but specific. + (license (license:fsf-free "https://github.com/openpmix/prrte?tab=License-1-ov-file#License-1-ov-file")))) |