diff options
Diffstat (limited to 'gnu/packages/patches')
| -rw-r--r-- | gnu/packages/patches/flatpak-fix-fonts-icons.patch | 89 | ||||
| -rw-r--r-- | gnu/packages/patches/freecad-vtk-9.3.patch | 43 | ||||
| -rw-r--r-- | gnu/packages/patches/ghc-9.2-cabal-support-package-path.patch | 67 | ||||
| -rw-r--r-- | gnu/packages/patches/ghc-aeson-encodeDouble.patch | 25 | ||||
| -rw-r--r-- | gnu/packages/patches/ghc-clock-realfrag.patch | 22 | ||||
| -rw-r--r-- | gnu/packages/patches/libvpx-CVE-2023-44488.patch | 107 | ||||
| -rw-r--r-- | gnu/packages/patches/mes-0.26.1-fixups.patch | 126 | ||||
| -rw-r--r-- | gnu/packages/patches/mixxx-link-qtscriptbytearray-qtscript.patch | 25 | ||||
| -rw-r--r-- | gnu/packages/patches/mixxx-system-googletest-benchmark.patch | 43 | ||||
| -rw-r--r-- | gnu/packages/patches/python-scikit-optimize-1148.patch | 32 | ||||
| -rw-r--r-- | gnu/packages/patches/python-scikit-optimize-1150.patch | 275 |
11 files changed, 353 insertions, 501 deletions
diff --git a/gnu/packages/patches/flatpak-fix-fonts-icons.patch b/gnu/packages/patches/flatpak-fix-fonts-icons.patch new file mode 100644 index 0000000000..5b9d855b2e --- /dev/null +++ b/gnu/packages/patches/flatpak-fix-fonts-icons.patch @@ -0,0 +1,89 @@ +modify from https://github.com/NixOS/nixpkgs/pull/262462 + +diff --git a/common/flatpak-run.c b/common/flatpak-run.c +index 94ad013..5c9f55e 100644 +--- a/common/flatpak-run.c ++++ b/common/flatpak-run.c +@@ -871,6 +871,49 @@ out: + return res; + } + ++static void ++get_gnu_closure (GHashTable *closure, const gchar *source_path) ++{ ++ if (g_file_test (source_path, G_FILE_TEST_IS_SYMLINK)) ++ { ++ g_autofree gchar *path = g_malloc(PATH_MAX); ++ realpath(source_path, path); ++ if (g_str_has_prefix(path, "/gnu/store/")) ++ { ++ *strchr(path + strlen("/gnu/store/"), '/') = 0; ++ g_hash_table_add(closure, g_steal_pointer (&path)); ++ } ++ } ++ else if (g_file_test (source_path, G_FILE_TEST_IS_DIR)) ++ { ++ g_autoptr(GDir) dir = g_dir_open(source_path, 0, NULL); ++ const gchar *file_name; ++ while ((file_name = g_dir_read_name(dir))) ++ { ++ g_autofree gchar *path = g_build_filename (source_path, file_name, NULL); ++ get_gnu_closure (closure, path); ++ } ++ } ++} ++ ++static void ++add_gnu_store_symlink_targets (FlatpakBwrap *bwrap, const gchar *source_path) ++{ ++ GHashTable *closure = g_hash_table_new_full (g_str_hash, g_str_equal, g_free, NULL); ++ ++ get_gnu_closure(closure, source_path); ++ ++ GHashTableIter iter; ++ gpointer path; ++ g_hash_table_iter_init(&iter, closure); ++ while (g_hash_table_iter_next(&iter, &path, NULL)) ++ { ++ flatpak_bwrap_add_args (bwrap, "--ro-bind", path, path, NULL); ++ } ++ ++ g_hash_table_destroy(closure); ++} ++ + static void + add_font_path_args (FlatpakBwrap *bwrap) + { +@@ -898,6 +946,18 @@ add_font_path_args (FlatpakBwrap *bwrap) + "\t<remap-dir as-path=\"%s\">/run/host/fonts</remap-dir>\n", + SYSTEM_FONTS_DIR); + } ++ else if (g_file_test ("/run/current-system/profile/share/fonts", G_FILE_TEST_EXISTS)) ++ { ++ add_gnu_store_symlink_targets (bwrap, "/run/current-system/profile/share/fonts"); ++ flatpak_bwrap_add_args (bwrap, ++ "--ro-bind", ++ "/run/current-system/profile/share/fonts", ++ "/run/host/fonts", ++ NULL); ++ g_string_append_printf (xml_snippet, ++ "\t<remap-dir as-path=\"%s\">/run/host/fonts</remap-dir>\n", ++ "/run/current-system/profile/share/fonts"); ++ } + + if (g_file_test ("/usr/local/share/fonts", G_FILE_TEST_EXISTS)) + { +@@ -998,6 +1058,13 @@ add_icon_path_args (FlatpakBwrap *bwrap) + "--ro-bind", "/usr/share/icons", "/run/host/share/icons", + NULL); + } ++ else if (g_file_test ("/run/current-system/profile/share/icons", G_FILE_TEST_IS_DIR)) ++ { ++ add_gnu_store_symlink_targets (bwrap, "/run/current-system/profile/share/icons"); ++ flatpak_bwrap_add_args (bwrap, ++ "--ro-bind", "/run/current-system/profile/share/icons", "/run/host/share/icons", ++ NULL); ++ } + + user_icons_path = g_build_filename (g_get_user_data_dir (), "icons", NULL); + user_icons = g_file_new_for_path (user_icons_path); diff --git a/gnu/packages/patches/freecad-vtk-9.3.patch b/gnu/packages/patches/freecad-vtk-9.3.patch new file mode 100644 index 0000000000..af9d654046 --- /dev/null +++ b/gnu/packages/patches/freecad-vtk-9.3.patch @@ -0,0 +1,43 @@ +From d0fb2b8b29fe0428d9dd8aa790b0d6e45c8a9516 Mon Sep 17 00:00:00 2001 +From: Adrian Insaurralde Avalos <adrianinsaval@gmail.com> +Date: Wed, 22 Nov 2023 16:42:06 -0300 +Subject: [PATCH] 3rdPart/salomesmesh - fix for vtk 9.3 compatibility + +minimum required version is 7.1 +--- + src/3rdParty/salomesmesh/inc/SMESH_SMDS.hxx | 4 ---- + src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp | 5 +++++ + 2 files changed, 5 insertions(+), 4 deletions(-) + +diff --git a/src/3rdParty/salomesmesh/inc/SMESH_SMDS.hxx b/src/3rdParty/salomesmesh/inc/SMESH_SMDS.hxx +index 7f89573efd0d..47a52fe585fe 100644 +--- a/src/3rdParty/salomesmesh/inc/SMESH_SMDS.hxx ++++ b/src/3rdParty/salomesmesh/inc/SMESH_SMDS.hxx +@@ -39,10 +39,6 @@ + #define SMDS_EXPORT + #endif + +-#ifdef VTK_HAS_MTIME_TYPE + #define VTK_MTIME_TYPE vtkMTimeType +-#else +-#define VTK_MTIME_TYPE unsigned long +-#endif + + #endif +diff --git a/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp b/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp +index 7e3de0070a02..e9895d615717 100644 +--- a/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp ++++ b/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp +@@ -1026,7 +1026,12 @@ void SMDS_UnstructuredGrid::BuildLinks() + GetLinks()->Allocate(this->GetNumberOfPoints()); + GetLinks()->Register(this); + //FIXME: vtk9 ++ #if VTK_VERSION_NUMBER < VTK_VERSION_CHECK(9,3,0) + GetLinks()->BuildLinks(this); ++ #else ++ GetLinks()->SetDataSet(this); ++ GetLinks()->BuildLinks(); ++ #endif + GetLinks()->Delete(); + #else + this->Links = SMDS_CellLinks::New();
\ No newline at end of file diff --git a/gnu/packages/patches/ghc-9.2-cabal-support-package-path.patch b/gnu/packages/patches/ghc-9.2-cabal-support-package-path.patch new file mode 100644 index 0000000000..9e4c405c50 --- /dev/null +++ b/gnu/packages/patches/ghc-9.2-cabal-support-package-path.patch @@ -0,0 +1,67 @@ +Without this patch, Cabal terminates if GHC_PACKAGE_PATH is set. This is +an annoyance with Guix as it makes heavy use of GHC_PACKAGE_PATH to have +GHC pickup Haskell package installed via Guix. Therefore, Cabal does +presently not work by default in environments created by Guix. This is +a workaround which makes Cabal respect GHC_PACKAGE_PATH. + +Taken from https://github.com/haskell/cabal/issues/3728 + +diff -upr a/libraries/Cabal/Cabal/src/Distribution/Simple/GHC.hs b/libraries/Cabal/Cabal/src/Distribution/Simple/GHC.hs +--- a/libraries/Cabal/Cabal/src/Distribution/Simple/GHC.hs 2022-11-06 20:41:17.000000000 +0100 ++++ b/libraries/Cabal/Cabal/src/Distribution/Simple/GHC.hs 2023-12-18 14:34:15.148911717 +0100 +@@ -71,6 +71,7 @@ module Distribution.Simple.GHC ( + ) where + + import Prelude () ++import Distribution.Compat.Environment (lookupEnv) + import Distribution.Compat.Prelude + + import qualified Distribution.Simple.GHC.Internal as Internal +@@ -117,7 +118,7 @@ import System.Directory + , canonicalizePath, removeFile, renameFile, getDirectoryContents ) + import System.FilePath ( (</>), (<.>), takeExtension + , takeDirectory, replaceExtension +- ,isRelative ) ++ , isRelative, searchPathSeparator ) + import qualified System.Info + #ifndef mingw32_HOST_OS + import System.Posix (createSymbolicLink) +@@ -333,9 +334,11 @@ getInstalledPackages :: Verbosity -> Com + -> ProgramDb + -> IO InstalledPackageIndex + getInstalledPackages verbosity comp packagedbs progdb = do +- checkPackageDbEnvVar verbosity + checkPackageDbStack verbosity comp packagedbs +- pkgss <- getInstalledPackages' verbosity packagedbs progdb ++ envPackageDBs <- ++ maybe [] (map SpecificPackageDB . unintersperse searchPathSeparator) ++ <$> lookupEnv "GHC_PACKAGE_PATH" ++ pkgss <- getInstalledPackages' verbosity (envPackageDBs ++ packagedbs) progdb + index <- toPackageIndex verbosity pkgss progdb + return $! hackRtsPackage index + +@@ -405,10 +408,6 @@ getUserPackageDB _verbosity ghcProg plat + packageConfFileName = "package.conf.d" + ghcVersion = fromMaybe (error "GHC.getUserPackageDB: no ghc version") $ programVersion ghcProg + +-checkPackageDbEnvVar :: Verbosity -> IO () +-checkPackageDbEnvVar verbosity = +- Internal.checkPackageDbEnvVar verbosity "GHC" "GHC_PACKAGE_PATH" +- + checkPackageDbStack :: Verbosity -> Compiler -> PackageDBStack -> IO () + checkPackageDbStack verbosity comp = + if flagPackageConf implInfo +@@ -461,8 +460,11 @@ getInstalledPackagesMonitorFiles :: Verb + -> ProgramDb + -> [PackageDB] + -> IO [FilePath] +-getInstalledPackagesMonitorFiles verbosity platform progdb = +- traverse getPackageDBPath ++getInstalledPackagesMonitorFiles verbosity platform progdb packageDBs = do ++ envPackageDBs <- ++ maybe [] (map SpecificPackageDB . unintersperse searchPathSeparator) ++ <$> lookupEnv "GHC_PACKAGE_PATH" ++ traverse getPackageDBPath (envPackageDBs ++ packageDBs) + where + getPackageDBPath :: PackageDB -> IO FilePath + getPackageDBPath GlobalPackageDB = diff --git a/gnu/packages/patches/ghc-aeson-encodeDouble.patch b/gnu/packages/patches/ghc-aeson-encodeDouble.patch new file mode 100644 index 0000000000..11ad425eae --- /dev/null +++ b/gnu/packages/patches/ghc-aeson-encodeDouble.patch @@ -0,0 +1,25 @@ +From 58766a1916b4980792763bab74f0c86e2a7ebf20 Mon Sep 17 00:00:00 2001 +From: Oleg Grenrus <oleg.grenrus@iki.fi> +Date: Thu, 1 Jun 2023 22:58:28 +0300 +Subject: [PATCH] QC-2.14.3 Double generators generates infinite number too + +--- + tests/PropUtils.hs | 5 +++-- + 1 file changed, 3 insertions(+), 2 deletions(-) + +diff --git a/tests/PropUtils.hs b/tests/PropUtils.hs +index 3c449029a..43de85d7f 100644 +--- a/tests/PropUtils.hs ++++ b/tests/PropUtils.hs +@@ -51,8 +51,9 @@ import qualified Data.Aeson.Decoding as Dec + + encodeDouble :: Double -> Double -> Property + encodeDouble num denom +- | isInfinite d || isNaN d = encode d === "null" +- | otherwise = (read . L.unpack . encode) d === d ++ | isNaN d = encode d === "null" ++ | isInfinite d = if d > 0 then encode d === "\"+inf\"" else encode d === "\"-inf\"" ++ | otherwise = (read . L.unpack . encode) d === d + where d = num / denom + + encodeInteger :: Integer -> Property diff --git a/gnu/packages/patches/ghc-clock-realfrag.patch b/gnu/packages/patches/ghc-clock-realfrag.patch new file mode 100644 index 0000000000..0f7bb0542a --- /dev/null +++ b/gnu/packages/patches/ghc-clock-realfrag.patch @@ -0,0 +1,22 @@ +From 8372e801ef062223756db69818a7b60cfd9bb066 Mon Sep 17 00:00:00 2001 +From: amesgen <amesgen@amesgen.de> +Date: Tue, 8 Aug 2023 23:36:45 +0200 +Subject: [PATCH] Fix `RealFrac Seconds` instance + +--- + System/Clock/Seconds.hs | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/System/Clock/Seconds.hs b/System/Clock/Seconds.hs +index a9a1c78..f7457cb 100644 +--- a/System/Clock/Seconds.hs ++++ b/System/Clock/Seconds.hs +@@ -50,7 +50,7 @@ instance Fractional Seconds where + + instance RealFrac Seconds where + properFraction (Seconds (TimeSpec s ns)) +- | s >= 0 = (fromIntegral s, Seconds $ TimeSpec 0 ns) ++ | s >= 0 || ns == 0 = (fromIntegral s, Seconds $ TimeSpec 0 ns) + | otherwise = (fromIntegral (s+1), Seconds $ TimeSpec (-1) ns) + + -- | The 'getTime' function shall return the current value for the diff --git a/gnu/packages/patches/libvpx-CVE-2023-44488.patch b/gnu/packages/patches/libvpx-CVE-2023-44488.patch new file mode 100644 index 0000000000..4ebb034eb4 --- /dev/null +++ b/gnu/packages/patches/libvpx-CVE-2023-44488.patch @@ -0,0 +1,107 @@ +From the upstream repo, can be removed after 1.14.1 +https://github.com/webmproject/libvpx/commit/df9fd9d5b7325060b2b921558a1eb20ca7880937.patch +https://www.openwall.com/lists/oss-security/2023/09/30/4 + +The test change didn't apply so it was removed from the patch + +From df9fd9d5b7325060b2b921558a1eb20ca7880937 Mon Sep 17 00:00:00 2001 +From: Jerome Jiang <jianj@google.com> +Date: Thu, 30 Jun 2022 13:48:56 -0400 +Subject: [PATCH] Fix bug with smaller width bigger size + +Fixed previous patch that clusterfuzz failed on. + +Local fuzzing passing overnight. + +Bug: webm:1642 +Change-Id: If0e08e72abd2e042efe4dcfac21e4cc51afdfdb9 +(cherry picked from commit 263682c9a29395055f3b3afe2d97be1828a6223f) +--- + test/resize_test.cc | 11 +++-------- + vp9/common/vp9_alloccommon.c | 13 ++++++------- + vp9/encoder/vp9_encoder.c | 27 +++++++++++++++++++++++++-- + 3 files changed, 34 insertions(+), 17 deletions(-) + +diff --git a/vp9/common/vp9_alloccommon.c b/vp9/common/vp9_alloccommon.c +index e53883f621d..9e73e40ea09 100644 +--- a/vp9/common/vp9_alloccommon.c ++++ b/vp9/common/vp9_alloccommon.c +@@ -135,13 +135,6 @@ int vp9_alloc_context_buffers(VP9_COMMON *cm, int width, int height) { + cm->free_mi(cm); + if (cm->alloc_mi(cm, new_mi_size)) goto fail; + } +- +- if (cm->seg_map_alloc_size < cm->mi_rows * cm->mi_cols) { +- // Create the segmentation map structure and set to 0. +- free_seg_map(cm); +- if (alloc_seg_map(cm, cm->mi_rows * cm->mi_cols)) goto fail; +- } +- + if (cm->above_context_alloc_cols < cm->mi_cols) { + vpx_free(cm->above_context); + cm->above_context = (ENTROPY_CONTEXT *)vpx_calloc( +@@ -156,6 +149,12 @@ int vp9_alloc_context_buffers(VP9_COMMON *cm, int width, int height) { + cm->above_context_alloc_cols = cm->mi_cols; + } + ++ if (cm->seg_map_alloc_size < cm->mi_rows * cm->mi_cols) { ++ // Create the segmentation map structure and set to 0. ++ free_seg_map(cm); ++ if (alloc_seg_map(cm, cm->mi_rows * cm->mi_cols)) goto fail; ++ } ++ + if (vp9_alloc_loop_filter(cm)) goto fail; + + return 0; +diff --git a/vp9/encoder/vp9_encoder.c b/vp9/encoder/vp9_encoder.c +index b66fdc0bca3..e3850775455 100644 +--- a/vp9/encoder/vp9_encoder.c ++++ b/vp9/encoder/vp9_encoder.c +@@ -1973,6 +1973,17 @@ static void alloc_copy_partition_data(VP9_COMP *cpi) { + } + } + ++static void free_copy_partition_data(VP9_COMP *cpi) { ++ vpx_free(cpi->prev_partition); ++ cpi->prev_partition = NULL; ++ vpx_free(cpi->prev_segment_id); ++ cpi->prev_segment_id = NULL; ++ vpx_free(cpi->prev_variance_low); ++ cpi->prev_variance_low = NULL; ++ vpx_free(cpi->copied_frame_cnt); ++ cpi->copied_frame_cnt = NULL; ++} ++ + void vp9_change_config(struct VP9_COMP *cpi, const VP9EncoderConfig *oxcf) { + VP9_COMMON *const cm = &cpi->common; + RATE_CONTROL *const rc = &cpi->rc; +@@ -2052,6 +2063,8 @@ void vp9_change_config(struct VP9_COMP *cpi, const VP9EncoderConfig *oxcf) { + new_mi_size = cm->mi_stride * calc_mi_size(cm->mi_rows); + if (cm->mi_alloc_size < new_mi_size) { + vp9_free_context_buffers(cm); ++ vp9_free_pc_tree(&cpi->td); ++ vpx_free(cpi->mbmi_ext_base); + alloc_compressor_data(cpi); + realloc_segmentation_maps(cpi); + cpi->initial_width = cpi->initial_height = 0; +@@ -2070,8 +2083,18 @@ void vp9_change_config(struct VP9_COMP *cpi, const VP9EncoderConfig *oxcf) { + update_frame_size(cpi); + + if (last_w != cpi->oxcf.width || last_h != cpi->oxcf.height) { +- memset(cpi->consec_zero_mv, 0, +- cm->mi_rows * cm->mi_cols * sizeof(*cpi->consec_zero_mv)); ++ vpx_free(cpi->consec_zero_mv); ++ CHECK_MEM_ERROR( ++ cm, cpi->consec_zero_mv, ++ vpx_calloc(cm->mi_rows * cm->mi_cols, sizeof(*cpi->consec_zero_mv))); ++ ++ vpx_free(cpi->skin_map); ++ CHECK_MEM_ERROR( ++ cm, cpi->skin_map, ++ vpx_calloc(cm->mi_rows * cm->mi_cols, sizeof(cpi->skin_map[0]))); ++ ++ free_copy_partition_data(cpi); ++ alloc_copy_partition_data(cpi); + if (cpi->oxcf.aq_mode == CYCLIC_REFRESH_AQ) + vp9_cyclic_refresh_reset_resize(cpi); + rc->rc_1_frame = 0; diff --git a/gnu/packages/patches/mes-0.26.1-fixups.patch b/gnu/packages/patches/mes-0.26.1-fixups.patch deleted file mode 100644 index 511b85cfc5..0000000000 --- a/gnu/packages/patches/mes-0.26.1-fixups.patch +++ /dev/null @@ -1,126 +0,0 @@ -Taken from upstream. - -From 7f549d02ac997505a7ed8a05339e73b851a875b8 Mon Sep 17 00:00:00 2001 -From: Janneke Nieuwenhuizen <janneke@gnu.org> -Date: Sun, 9 Jun 2024 08:18:35 +0200 -Subject: [PATCH 1/4] build: Remove a0-call-trunc-int from xfail for - mescc-x86_64. - -Reported by Vagrant Cascadian <vagrant@debian.org> via IRC. - -* build-aux/check-mescc.sh (xfail_tests)[mescc x86_64]: Remove -a0-call-trunc-int.c. ---- - build-aux/check-mescc.sh | 1 - - 1 file changed, 1 deletion(-) - -diff --git a/build-aux/check-mescc.sh b/build-aux/check-mescc.sh -index fb5e1ef46..b2d771c89 100755 ---- a/build-aux/check-mescc.sh -+++ b/build-aux/check-mescc.sh -@@ -273,7 +273,6 @@ lib/tests/scaffold/91-goto-array.c - lib/tests/scaffold/16-cast.c - lib/tests/scaffold/17-compare-unsigned-le.c - lib/tests/scaffold/17-compare-rotated.c --lib/tests/scaffold/a0-call-trunc-int.c - " - fi - --- -2.41.0 - -From 3389cf4aef17cec38a5fd693c4c5d62520b0eab3 Mon Sep 17 00:00:00 2001 -From: Janneke Nieuwenhuizen <janneke@gnu.org> -Date: Sun, 9 Jun 2024 08:28:13 +0200 -Subject: [PATCH 2/4] lib: arm: Fix signal.h header. - -This is a follow-up to commit - 83a08a0788a5417d0a0bae3a43dc9c4026e09d99 - lib: Add ucontext_t for all architectures. - -* include/linux/arm/signal.h: Add missing semicolon. ---- - include/linux/arm/signal.h | 3 ++- - 1 file changed, 2 insertions(+), 1 deletion(-) - -diff --git a/include/linux/arm/signal.h b/include/linux/arm/signal.h -index 06cb09176..381811714 100644 ---- a/include/linux/arm/signal.h -+++ b/include/linux/arm/signal.h -@@ -1,6 +1,7 @@ - /* -*-comment-start: "//";comment-end:""-*- - * GNU Mes --- Maxwell Equations of Software - * Copyright © 2024 Ekaitz Zarraga <ekaitz@elenq.tech> -+ * Copyright © 2024 Janneke Nieuwenhuizen <janneke@gnu.org> - * - * This file is part of GNU Mes. - * -@@ -20,7 +21,7 @@ - - // Taken from musl libc (4a16ddf5) - --typedef int greg_t -+typedef int greg_t; - typedef int gregset_t[18]; - typedef struct sigcontext - { --- -2.41.0 - -From 835d13ee2614a8b6ed54e5b7ead44b3d93cd63b4 Mon Sep 17 00:00:00 2001 -From: Janneke Nieuwenhuizen <janneke@gnu.org> -Date: Sun, 9 Jun 2024 11:20:42 +0200 -Subject: [PATCH 3/4] build: Add 90-signal to xfail for mescc-arm. - -Bisected until 0.23; this test sadly never worked on arm. - -* build-aux/check-mescc.sh (xfail_tests)[mescc-arm]: Add 90-signal.c ---- - build-aux/check-mescc.sh | 1 + - 1 file changed, 1 insertion(+) - -diff --git a/build-aux/check-mescc.sh b/build-aux/check-mescc.sh -index b2d771c89..3900601e9 100755 ---- a/build-aux/check-mescc.sh -+++ b/build-aux/check-mescc.sh -@@ -280,6 +280,7 @@ lib/tests/scaffold/17-compare-rotated.c - xfail_tests="$xfail_tests - lib/tests/scaffold/17-compare-rotated.c - lib/tests/scaffold/67-m1-overflow-check.c -+lib/tests/signal/90-signal.c - " - fi - --- -2.41.0 - -From 1683f074a0462bc27023ce5a980ff3d35d4126cf Mon Sep 17 00:00:00 2001 -From: Janneke Nieuwenhuizen <janneke@gnu.org> -Date: Sun, 9 Jun 2024 11:24:25 +0200 -Subject: [PATCH 4/4] build: Remove 17-compare-rotated, 67-m1-overflow-check - xfail for mescc-arm. - -These were fixed by the riscv64 work. - -* build-aux/check-mescc.sh (xfail_tests)[mescc arm]: Remove -17-compare-rotated, 67-m1-overflow-check. ---- - build-aux/check-mescc.sh | 2 -- - 1 file changed, 2 deletions(-) - -diff --git a/build-aux/check-mescc.sh b/build-aux/check-mescc.sh -index 3900601e9..9abf43384 100755 ---- a/build-aux/check-mescc.sh -+++ b/build-aux/check-mescc.sh -@@ -278,8 +278,6 @@ lib/tests/scaffold/17-compare-rotated.c - - if test $mes_cpu = arm; then - xfail_tests="$xfail_tests --lib/tests/scaffold/17-compare-rotated.c --lib/tests/scaffold/67-m1-overflow-check.c - lib/tests/signal/90-signal.c - " - fi --- -2.41.0 - diff --git a/gnu/packages/patches/mixxx-link-qtscriptbytearray-qtscript.patch b/gnu/packages/patches/mixxx-link-qtscriptbytearray-qtscript.patch deleted file mode 100644 index d7cd1c0d28..0000000000 --- a/gnu/packages/patches/mixxx-link-qtscriptbytearray-qtscript.patch +++ /dev/null @@ -1,25 +0,0 @@ -From 7554aefc886d4ebc4b4c139a5cddcab6163cf72f Mon Sep 17 00:00:00 2001 -From: Vinicius Monego <monego@posteo.net> -Date: Thu, 30 Sep 2021 23:37:29 -0300 -Subject: [PATCH] Link QtScriptByteArray with QtScript. - ---- - CMakeLists.txt | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 492ccae..05fec08 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -2077,7 +2077,7 @@ add_library(QtScriptByteArray STATIC EXCLUDE_FROM_ALL - lib/qtscript-bytearray/bytearrayprototype.cpp - ) - set_target_properties(QtScriptByteArray PROPERTIES AUTOMOC ON) --target_link_libraries(QtScriptByteArray Qt5::Core) -+target_link_libraries(QtScriptByteArray Qt5::Core Qt5::Script) - target_include_directories(mixxx-lib SYSTEM PUBLIC lib/qtscript-bytearray) - target_link_libraries(mixxx-lib PRIVATE QtScriptByteArray) - --- -2.30.2 - diff --git a/gnu/packages/patches/mixxx-system-googletest-benchmark.patch b/gnu/packages/patches/mixxx-system-googletest-benchmark.patch deleted file mode 100644 index 7adbe66208..0000000000 --- a/gnu/packages/patches/mixxx-system-googletest-benchmark.patch +++ /dev/null @@ -1,43 +0,0 @@ -From eb2079d467f8658eea13e2ed86cc69d864632866 Mon Sep 17 00:00:00 2001 -From: Vinicius Monego <monego@posteo.net> -Date: Wed, 29 Sep 2021 19:07:35 -0300 -Subject: [PATCH] Use system googletest and benchmark. - ---- - CMakeLists.txt | 13 +++---------- - 1 file changed, 3 insertions(+), 10 deletions(-) - -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 10e9b0a..492ccae 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -1467,12 +1467,7 @@ set(gtest_force_shared_crt ON CACHE BOOL "Pass Mixxx compiler/linker options to - # Prevent installation of GoogleTest libraries - set(INSTALL_GTEST OFF CACHE BOOL "Disable installation of GoogleTest" FORCE) - --# Add googletest directly to our build. This adds the following targets: --# gtest, gtest_main, gmock and gmock_main --add_subdirectory( -- "${CMAKE_CURRENT_SOURCE_DIR}/lib/googletest" -- "${CMAKE_CURRENT_BINARY_DIR}/lib/googletest" --) -+find_package(GTest CONFIG REQUIRED) - - add_executable(mixxx-test - src/test/analyserwaveformtest.cpp -@@ -1582,10 +1577,8 @@ set(BENCHMARK_ENABLE_TESTING OFF CACHE BOOL "" FORCE) - # Prevent installation of google/benchmark artifacts - set(BENCHMARK_ENABLE_INSTALL OFF CACHE BOOL "Disable installation of google/benchmark" FORCE) - --add_subdirectory( -- "${CMAKE_CURRENT_SOURCE_DIR}/lib/benchmark" -- "${CMAKE_CURRENT_BINARY_DIR}/lib/benchmark" --) -+find_package(benchmark CONFIG REQUIRED) -+ - target_link_libraries(mixxx-test PRIVATE benchmark) - - # Test Suite --- -2.30.2 - diff --git a/gnu/packages/patches/python-scikit-optimize-1148.patch b/gnu/packages/patches/python-scikit-optimize-1148.patch deleted file mode 100644 index 6ad854ab1e..0000000000 --- a/gnu/packages/patches/python-scikit-optimize-1148.patch +++ /dev/null @@ -1,32 +0,0 @@ -From 3a5d5eb90ec9d8d4905c05387748486157cadbbb Mon Sep 17 00:00:00 2001 -From: valtron <valtron2000@gmail.com> -Date: Tue, 14 Feb 2023 09:56:10 -0700 -Subject: [PATCH] `np.int` -> `int` - -`np.int is int` and it was deprecated in numpy 1.20: https://numpy.org/doc/1.20/release/1.20.0-notes.html#deprecations ---- - skopt/space/transformers.py | 4 ++-- - 1 file changed, 2 insertions(+), 2 deletions(-) - -diff --git a/skopt/space/transformers.py b/skopt/space/transformers.py -index 68892952..f2dfb164 100644 ---- a/skopt/space/transformers.py -+++ b/skopt/space/transformers.py -@@ -259,7 +259,7 @@ def transform(self, X): - if (self.high - self.low) == 0.: - return X * 0. - if self.is_int: -- return (np.round(X).astype(np.int) - self.low) /\ -+ return (np.round(X).astype(int) - self.low) /\ - (self.high - self.low) - else: - return (X - self.low) / (self.high - self.low) -@@ -272,7 +272,7 @@ def inverse_transform(self, X): - raise ValueError("All values should be greater than 0.0") - X_orig = X * (self.high - self.low) + self.low - if self.is_int: -- return np.round(X_orig).astype(np.int) -+ return np.round(X_orig).astype(int) - return X_orig - - diff --git a/gnu/packages/patches/python-scikit-optimize-1150.patch b/gnu/packages/patches/python-scikit-optimize-1150.patch deleted file mode 100644 index 0cdf361a80..0000000000 --- a/gnu/packages/patches/python-scikit-optimize-1150.patch +++ /dev/null @@ -1,275 +0,0 @@ -From cd74e00d0e4f435d548444e1a5edc20155e371d7 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Jonas=20T=C3=B8rnes?= <jonas.tornes@gmail.com> -Date: Wed, 15 Feb 2023 18:47:52 +0100 -Subject: [PATCH 1/5] Update RandomForesetRegressor criterion to be inline with - scikit-learn change from mse to squared error this has the same funcitonality - ---- - requirements.txt | 6 +++--- - setup.py | 6 +++--- - skopt/learning/forest.py | 30 +++++++++++++++--------------- - 3 files changed, 21 insertions(+), 21 deletions(-) - -diff --git a/requirements.txt b/requirements.txt -index 1eaa3083a..23ab3d856 100644 ---- a/requirements.txt -+++ b/requirements.txt -@@ -1,6 +1,6 @@ --numpy>=1.13.3 --scipy>=0.19.1 --scikit-learn>=0.20 -+numpy>=1.23.2 -+scipy>=1.10.0 -+scikit-learn>=1.2.1 - matplotlib>=2.0.0 - pytest - pyaml>=16.9 -diff --git a/setup.py b/setup.py -index 8879da880..e7f921765 100644 ---- a/setup.py -+++ b/setup.py -@@ -42,9 +42,9 @@ - classifiers=CLASSIFIERS, - packages=['skopt', 'skopt.learning', 'skopt.optimizer', 'skopt.space', - 'skopt.learning.gaussian_process', 'skopt.sampler'], -- install_requires=['joblib>=0.11', 'pyaml>=16.9', 'numpy>=1.13.3', -- 'scipy>=0.19.1', -- 'scikit-learn>=0.20.0'], -+ install_requires=['joblib>=0.11', 'pyaml>=16.9', 'numpy>=1.23.2', -+ 'scipy>=1.10.0', -+ 'scikit-learn>=1.2.1'], - extras_require={ - 'plots': ["matplotlib>=2.0.0"] - } -diff --git a/skopt/learning/forest.py b/skopt/learning/forest.py -index 096770c1d..ebde568f5 100644 ---- a/skopt/learning/forest.py -+++ b/skopt/learning/forest.py -@@ -27,7 +27,7 @@ def _return_std(X, trees, predictions, min_variance): - ------- - std : array-like, shape=(n_samples,) - Standard deviation of `y` at `X`. If criterion -- is set to "mse", then `std[i] ~= std(y | X[i])`. -+ is set to "squared_error", then `std[i] ~= std(y | X[i])`. - - """ - # This derives std(y | x) as described in 4.3.2 of arXiv:1211.0906 -@@ -61,9 +61,9 @@ class RandomForestRegressor(_sk_RandomForestRegressor): - n_estimators : integer, optional (default=10) - The number of trees in the forest. - -- criterion : string, optional (default="mse") -+ criterion : string, optional (default="squared_error") - The function to measure the quality of a split. Supported criteria -- are "mse" for the mean squared error, which is equal to variance -+ are "squared_error" for the mean squared error, which is equal to variance - reduction as feature selection criterion, and "mae" for the mean - absolute error. - -@@ -194,7 +194,7 @@ class RandomForestRegressor(_sk_RandomForestRegressor): - .. [1] L. Breiman, "Random Forests", Machine Learning, 45(1), 5-32, 2001. - - """ -- def __init__(self, n_estimators=10, criterion='mse', max_depth=None, -+ def __init__(self, n_estimators=10, criterion='squared_error', max_depth=None, - min_samples_split=2, min_samples_leaf=1, - min_weight_fraction_leaf=0.0, max_features='auto', - max_leaf_nodes=None, min_impurity_decrease=0., -@@ -228,20 +228,20 @@ def predict(self, X, return_std=False): - Returns - ------- - predictions : array-like of shape = (n_samples,) -- Predicted values for X. If criterion is set to "mse", -+ Predicted values for X. If criterion is set to "squared_error", - then `predictions[i] ~= mean(y | X[i])`. - - std : array-like of shape=(n_samples,) - Standard deviation of `y` at `X`. If criterion -- is set to "mse", then `std[i] ~= std(y | X[i])`. -+ is set to "squared_error", then `std[i] ~= std(y | X[i])`. - - """ - mean = super(RandomForestRegressor, self).predict(X) - - if return_std: -- if self.criterion != "mse": -+ if self.criterion != "squared_error": - raise ValueError( -- "Expected impurity to be 'mse', got %s instead" -+ "Expected impurity to be 'squared_error', got %s instead" - % self.criterion) - std = _return_std(X, self.estimators_, mean, self.min_variance) - return mean, std -@@ -257,9 +257,9 @@ class ExtraTreesRegressor(_sk_ExtraTreesRegressor): - n_estimators : integer, optional (default=10) - The number of trees in the forest. - -- criterion : string, optional (default="mse") -+ criterion : string, optional (default="squared_error") - The function to measure the quality of a split. Supported criteria -- are "mse" for the mean squared error, which is equal to variance -+ are "squared_error" for the mean squared error, which is equal to variance - reduction as feature selection criterion, and "mae" for the mean - absolute error. - -@@ -390,7 +390,7 @@ class ExtraTreesRegressor(_sk_ExtraTreesRegressor): - .. [1] L. Breiman, "Random Forests", Machine Learning, 45(1), 5-32, 2001. - - """ -- def __init__(self, n_estimators=10, criterion='mse', max_depth=None, -+ def __init__(self, n_estimators=10, criterion='squared_error', max_depth=None, - min_samples_split=2, min_samples_leaf=1, - min_weight_fraction_leaf=0.0, max_features='auto', - max_leaf_nodes=None, min_impurity_decrease=0., -@@ -425,19 +425,19 @@ def predict(self, X, return_std=False): - Returns - ------- - predictions : array-like of shape=(n_samples,) -- Predicted values for X. If criterion is set to "mse", -+ Predicted values for X. If criterion is set to "squared_error", - then `predictions[i] ~= mean(y | X[i])`. - - std : array-like of shape=(n_samples,) - Standard deviation of `y` at `X`. If criterion -- is set to "mse", then `std[i] ~= std(y | X[i])`. -+ is set to "squared_error", then `std[i] ~= std(y | X[i])`. - """ - mean = super(ExtraTreesRegressor, self).predict(X) - - if return_std: -- if self.criterion != "mse": -+ if self.criterion != "squared_error": - raise ValueError( -- "Expected impurity to be 'mse', got %s instead" -+ "Expected impurity to be 'squared_error', got %s instead" - % self.criterion) - std = _return_std(X, self.estimators_, mean, self.min_variance) - return mean, std - -From 6eb2d4ddaa299ae47d9a69ffb31ebc4ed366d1c1 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Jonas=20T=C3=B8rnes?= <jonas.tornes@gmail.com> -Date: Thu, 16 Feb 2023 11:34:58 +0100 -Subject: [PATCH 2/5] Change test to be consistent with code changes. - ---- - skopt/learning/tests/test_forest.py | 4 ++-- - 1 file changed, 2 insertions(+), 2 deletions(-) - -diff --git a/skopt/learning/tests/test_forest.py b/skopt/learning/tests/test_forest.py -index 0711cde9d..c6ed610f3 100644 ---- a/skopt/learning/tests/test_forest.py -+++ b/skopt/learning/tests/test_forest.py -@@ -35,7 +35,7 @@ def test_random_forest(): - assert_array_equal(clf.predict(T), true_result) - assert 10 == len(clf) - -- clf = RandomForestRegressor(n_estimators=10, criterion="mse", -+ clf = RandomForestRegressor(n_estimators=10, criterion="squared_error", - max_depth=None, min_samples_split=2, - min_samples_leaf=1, - min_weight_fraction_leaf=0., -@@ -80,7 +80,7 @@ def test_extra_forest(): - assert_array_equal(clf.predict(T), true_result) - assert 10 == len(clf) - -- clf = ExtraTreesRegressor(n_estimators=10, criterion="mse", -+ clf = ExtraTreesRegressor(n_estimators=10, criterion="squared_error", - max_depth=None, min_samples_split=2, - min_samples_leaf=1, min_weight_fraction_leaf=0., - max_features="auto", max_leaf_nodes=None, - -From 52c620add07d845debbaff2ce2b1c5faf3eae79b Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Jonas=20T=C3=B8rnes?= <jonas.tornes@gmail.com> -Date: Wed, 22 Feb 2023 16:59:03 +0100 -Subject: [PATCH 3/5] Update skopt/learning/forest.py -MIME-Version: 1.0 -Content-Type: text/plain; charset=UTF-8 -Content-Transfer-Encoding: 8bit - -Fix max line width - -Co-authored-by: Roland Laurès <roland@laures-valdivia.net> ---- - skopt/learning/forest.py | 4 ++-- - 1 file changed, 2 insertions(+), 2 deletions(-) - -diff --git a/skopt/learning/forest.py b/skopt/learning/forest.py -index ebde568f5..07dc42664 100644 ---- a/skopt/learning/forest.py -+++ b/skopt/learning/forest.py -@@ -194,8 +194,8 @@ class RandomForestRegressor(_sk_RandomForestRegressor): - .. [1] L. Breiman, "Random Forests", Machine Learning, 45(1), 5-32, 2001. - - """ -- def __init__(self, n_estimators=10, criterion='squared_error', max_depth=None, -- min_samples_split=2, min_samples_leaf=1, -+ def __init__(self, n_estimators=10, criterion='squared_error', -+ max_depth=None, min_samples_split=2, min_samples_leaf=1, - min_weight_fraction_leaf=0.0, max_features='auto', - max_leaf_nodes=None, min_impurity_decrease=0., - bootstrap=True, oob_score=False, - -From 52a7db95cb567186fb4e9003139fea4592bdbf05 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Jonas=20T=C3=B8rnes?= <jonas.tornes@gmail.com> -Date: Wed, 22 Feb 2023 17:03:25 +0100 -Subject: [PATCH 4/5] Fix line widht issues - ---- - skopt/learning/forest.py | 4 ++-- - 1 file changed, 2 insertions(+), 2 deletions(-) - -diff --git a/skopt/learning/forest.py b/skopt/learning/forest.py -index 07dc42664..d4c24456b 100644 ---- a/skopt/learning/forest.py -+++ b/skopt/learning/forest.py -@@ -390,8 +390,8 @@ class ExtraTreesRegressor(_sk_ExtraTreesRegressor): - .. [1] L. Breiman, "Random Forests", Machine Learning, 45(1), 5-32, 2001. - - """ -- def __init__(self, n_estimators=10, criterion='squared_error', max_depth=None, -- min_samples_split=2, min_samples_leaf=1, -+ def __init__(self, n_estimators=10, criterion='squared_error', -+ max_depth=None, min_samples_split=2, min_samples_leaf=1, - min_weight_fraction_leaf=0.0, max_features='auto', - max_leaf_nodes=None, min_impurity_decrease=0., - bootstrap=False, oob_score=False, - -From 6b185e489fb4a56625e8505292a20c80434f0633 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Jonas=20T=C3=B8rnes?= <jonas.tornes@gmail.com> -Date: Wed, 22 Feb 2023 18:37:11 +0100 -Subject: [PATCH 5/5] Fix lin width issues for comments. - ---- - skopt/learning/forest.py | 12 ++++++------ - 1 file changed, 6 insertions(+), 6 deletions(-) - -diff --git a/skopt/learning/forest.py b/skopt/learning/forest.py -index d4c24456b..eb3bd6648 100644 ---- a/skopt/learning/forest.py -+++ b/skopt/learning/forest.py -@@ -63,9 +63,9 @@ class RandomForestRegressor(_sk_RandomForestRegressor): - - criterion : string, optional (default="squared_error") - The function to measure the quality of a split. Supported criteria -- are "squared_error" for the mean squared error, which is equal to variance -- reduction as feature selection criterion, and "mae" for the mean -- absolute error. -+ are "squared_error" for the mean squared error, which is equal to -+ variance reduction as feature selection criterion, and "mae" for the -+ mean absolute error. - - max_features : int, float, string or None, optional (default="auto") - The number of features to consider when looking for the best split: -@@ -259,9 +259,9 @@ class ExtraTreesRegressor(_sk_ExtraTreesRegressor): - - criterion : string, optional (default="squared_error") - The function to measure the quality of a split. Supported criteria -- are "squared_error" for the mean squared error, which is equal to variance -- reduction as feature selection criterion, and "mae" for the mean -- absolute error. -+ are "squared_error" for the mean squared error, which is equal to -+ variance reduction as feature selection criterion, and "mae" for the -+ mean absolute error. - - max_features : int, float, string or None, optional (default="auto") - The number of features to consider when looking for the best split: |