diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 383 |
1 files changed, 292 insertions, 91 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 85f8c3c00b..d3bfb10acf 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -1211,13 +1211,13 @@ iotop, uptime, pidof, tty, taskset, pmap.") (define-public python-shapely (package (name "python-shapely") - (version "1.8.2") + (version "1.8.4") (source (origin (method url-fetch) (uri (pypi-uri "Shapely" version)) (sha256 - (base32 "1dpbjw0w2l1r9s5drmi4cyr1yd5h2a4m9vip7qhy7mbg03azjajp")))) + (base32 "130rqd0czi128wm5pdn47v4m6czxd7pkzanbya8q48gsm8ffb5d1")))) (build-system python-build-system) (native-inputs (list python-cython python-matplotlib python-pytest @@ -1766,6 +1766,26 @@ client-side scripting and application development around the NETCONF protocol.") (license license:asl2.0))) +(define-public python-ncls + (package + (name "python-ncls") + (version "0.0.65") + (source (origin + (method url-fetch) + (uri (pypi-uri "ncls" version)) + (sha256 + (base32 + "1wx06xqknd2r98w8z93f47g5dpxzn92kamhj8vkq0nj569hf7cg1")))) + (build-system python-build-system) + (propagated-inputs (list python-numpy)) + (home-page "https://github.com/endrebak/ncls") + (synopsis "Nested containment list data structure") + (description + "This package provides a wrapper for the nested containment list data +structure. It is a static interval-tree that is fast for both construction +and lookups.") + (license license:bsd-3))) + (define-public python-license-expression (package (name "python-license-expression") @@ -1792,13 +1812,13 @@ conventions and aliases in the same expression.") (define-public python-wand (package (name "python-wand") - (version "0.6.7") + (version "0.6.10") (source (origin (method url-fetch) (uri (pypi-uri "Wand" version)) (sha256 - (base32 "1nxn7zvbnfgk4kkxajbzglcjpbgr84ilhnxm990nifjxqb61ph7b")))) + (base32 "0mywzs235skwq670c80achrd34kangwy24793k1nij3651zllgrp")))) (build-system python-build-system) (arguments `(#:phases @@ -1814,8 +1834,7 @@ conventions and aliases in the same expression.") (home-page "https://docs.wand-py.org/") (synopsis "MagickWand API binding for Python") (description - "Wand is a ctypes-based binding for the C API of ImageMagick's MagickWand -library.") + "Wand is a ctypes-based binding for ImageMagick's MagickWand library.") (license license:expat))) (define-public python-lockfile @@ -1935,14 +1954,14 @@ other machines, such as over the network.") (define-public python-setuptools (package (name "python-setuptools") - (version "62.0.0") + (version "64.0.3") (source (origin (method url-fetch) (uri (pypi-uri "setuptools" version)) (sha256 (base32 - "0sm8n6y6q640cpac9wjyggidbgi4n9la7vs7pwriyvhvgzccp6br")) + "1sllqf0bhsl2yilf1w0xnlz0r4yaksmwaj0ap91zdc6kgbigdjiv")) (modules '((guix build utils))) (snippet ;; Remove included binaries which are used to build self-extracting @@ -2414,7 +2433,7 @@ for additional processing.") "1cagg06vfph864s6l5jb0zqliwxh647bki8j6lf4a4qrv40jnhs8")))) (build-system python-build-system) (propagated-inputs - (list python-mock python-nose python-six python-unittest2)) + (list python-mock python-nose python-six)) (native-inputs (list python-coverage)) (home-page "https://github.com/celery/case") @@ -4225,7 +4244,6 @@ logging and tracing of the execution.") (list python-lockfile)) (native-inputs (list python-coverage - python-unittest2 python-testtools python-testscenarios python-twine @@ -4866,6 +4884,60 @@ utility, a static analysis tool (linter) for Robot Framework source files.") (description "Pabot is a parallel executor for Robot Framework tests.") (license license:asl2.0))) +(define-public python-sshtunnel + (package + (name "python-sshtunnel") + (version "0.4.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "sshtunnel" version)) + (sha256 + (base32 + "1z7rdgpp9m36ysh9pfzrn3vyiaj05bkjvcjdhj8vz0fvfjkhxjz7")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? (invoke "pytest" "-vv" "tests"))))))) + (propagated-inputs (list python-paramiko)) + (native-inputs (list openssh python-pytest)) + (home-page "https://github.com/pahaz/sshtunnel") + (synopsis "Python SSH tunnels library") + (description "@code{sshtunnel} is a Python module for easily creating SSH +tunnels in the background, using Python.") + (license license:expat))) + +(define-public python-robotframework-sshtunnellibrary + (package + (name "python-robotframework-sshtunnellibrary") + (version "1.0.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/C-Squad/robotframework-sshtunnellibrary") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1vkkmkb8iql13xpbyj4hvnnmfgzqlr8rffgryp2082cadb3w7xrd")))) + (build-system python-build-system) + (arguments + (list #:phases #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "unittest" + "discover" "-s" "test"))))))) + (propagated-inputs (list python-robotframework python-sshtunnel)) + (home-page "https://github.com/C-Squad/robotframework-sshtunnellibrary") + (synopsis "Alternative RobotFramework library for SSH tunnels") + (description "SSHTunnelLibrary is an alternative RobotFramework +library (to the more official one that comes from the +@code{robotframework-sshlibrary} package) to support SSH tunnels.") + (license license:asl2.0))) + (define-public python-robotframework-stacktrace (package (name "python-robotframework-stacktrace") @@ -5636,6 +5708,8 @@ with Python. It contains among other things: a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran code, useful linear algebra, Fourier transform, and random number capabilities.") + (properties + '((upstream-name . "numpy"))) (license license:bsd-3))) (define-public python-numpy-next @@ -8276,8 +8350,11 @@ module with a few extra procedures.") (lambda* (#:key tests? #:allow-other-keys) (when tests? ;; Do not test the myproject.toml build as it tries to pull - ;; dependencies from the Internet. - (invoke "pytest" "-vv" "-k" "not project")))))))) + ;; dependencies from the Internet. Do not run a test that + ;; tries to emulate a broken proprietary CI set-up, fails + ;; to do so correctly, and then throws an error about it. + (invoke "pytest" "-vv" "-k" + "not project and not test_function_throttled")))))))) (native-inputs (modify-inputs (package-native-inputs python-jaraco-functools-bootstrap) @@ -14129,13 +14206,13 @@ minimal and fast API targeting the following uses: (define-public python-icalendar (package (name "python-icalendar") - (version "4.0.7") + (version "4.1.0") (source (origin (method url-fetch) (uri (pypi-uri "icalendar" version)) (sha256 (base32 - "19574j3jwssm2dkqykih4568xqfgjsa3hcd79yl5s2vfys3qvh8g")))) + "15dkq42rkqjdi17rpvmd1plnbwn4daby0nk1s1c3xi7w5v0bfj4p")))) (build-system python-build-system) (propagated-inputs (list python-dateutil python-pytz)) @@ -17225,13 +17302,13 @@ addresses, and phone numbers.") (define-public python-pyaml (package (name "python-pyaml") - (version "18.11.0") + (version "21.10.1") (source (origin (method url-fetch) (uri (pypi-uri "pyaml" version)) (sha256 (base32 - "0fi604ix8lbpj1266q7js6szm771saprdzzcdwmj43wy83694qmr")))) + "10w3frzqir5sbpglc9bwb8w414dsivmcvji07yxy61mz2gp9ylf6")))) (build-system python-build-system) (native-inputs (list python-unidecode)) @@ -18113,9 +18190,17 @@ JSON) codec.") (arguments `(#:phases (modify-phases %standard-phases - (replace 'check + (add-after 'unpack 'remove-test-hypothesis-deadlines (lambda _ - (invoke "pytest" "-v")))))) + (substitute* "tests/test_utils.py" + (("from hypothesis import given") + "from hypothesis import given, settings") + (("( +)@given" all spaces) + (string-append spaces "@settings(deadline=None)\n" all))))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-v"))))))) (native-inputs (list python-hypothesis python-pytest-cov python-pytest-mock python-pytest)) @@ -18125,13 +18210,13 @@ JSON) codec.") (synopsis "Natural sorting for python and shell") (description "Natsort lets you apply natural sorting on lists instead of - lexicographical. If you use the built-in @code{sorted} method in python - on a list such as @code{[@code{a20}, @code{a9}, @code{a1}, @code{a4}, - @code{a10}]}, it would be returned as @code{[@code{a1}, @code{a10}, @code{a20}, - @code{a4}, @code{a9}]}. Natsort provides a function @code{natsorted} that - identifies numbers and sorts them separately from strings. It can also sort - version numbers, real numbers, mixed types and more, and comes with a shell - command @command{natsort} that exposes this functionality in the command line.") +lexicographical. If you use the built-in @code{sorted} method in python on a +list such as @code{[@code{a20}, @code{a9}, @code{a1}, @code{a4}, @code{a10}]}, +it would be returned as @code{[@code{a1}, @code{a10}, @code{a20}, @code{a4}, +@code{a9}]}. Natsort provides a function @code{natsorted} that identifies +numbers and sorts them separately from strings. It can also sort version +numbers, real numbers, mixed types and more, and comes with a shell command +@command{natsort} that exposes this functionality in the command line.") (license license:expat))) (define-public glances @@ -18311,40 +18396,40 @@ JSON) codec.") (define-public python-setproctitle (package (name "python-setproctitle") - (version "1.1.10") + (version "1.3.2") (source (origin (method url-fetch) (uri (pypi-uri "setproctitle" version)) (sha256 (base32 - "163kplw9dcrw0lffq1bvli5yws3rngpnvrxrzdw89pbphjjvg0v2")))) + "1zbp6kyzfbrmbh9j3idai0mnpa28zn5db3k5l07jc3c3gj89gyxr")))) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases (replace 'check - (lambda _ + (lambda* (#:key tests? #:allow-other-keys) (setenv "PYTHON" (or (which "python3") (which "python"))) (setenv "PYCONFIG" (if (which "python3-config") "python3-config --embed" "python-config")) - (setenv "CC" "gcc") - ;; No need to extend PYTHONPATH to find the built package, since - ;; the Makefile will build anyway - (invoke "make" "check")))))) + (substitute* "tests/conftest.py" + (("cc") "gcc")) + (when tests? + (invoke "pytest" "tests/"))))))) (native-inputs - (list procps)) ; required for tests + (list procps python-pytest)) ; required for tests (home-page "https://github.com/dvarrazzo/py-setproctitle") (synopsis "Setproctitle implementation for Python to customize the process title") (description "The library allows a process to change its title (as displayed - by system tools such as ps and top). +by system tools such as @code{ps} and @code{top}). - Changing the title is mostly useful in multi-process systems, for - example when a master process is forked: changing the children's title - allows identifying the task each process is busy with. The technique - is used by PostgreSQL and the OpenSSH Server for example.") +Changing the title is mostly useful in multi-process systems, for example when a +master process is forked: changing the children's title allows identifying the +task each process is busy with. The technique is used by PostgreSQL and the +OpenSSH Server for example.") (license license:bsd-3))) (define-public python-validictory @@ -19087,7 +19172,15 @@ from the header, as well as section details and data available.") (uri (pypi-uri "m2r" version)) (sha256 (base32 - "16gdm8i06jjmlpvckpfmlkr4693dh0vs192vgsqn84fsdkbbm45z")))) + "16gdm8i06jjmlpvckpfmlkr4693dh0vs192vgsqn84fsdkbbm45z")) + (modules '((guix build utils))) + (snippet + ;; Adjust test regex for Python 3.10 compatibility. + ;; Taken from upstream pull request: + ;; https://github.com/miyakogi/m2r/pull/62 + '(substitute* "tests/test_cli.py" + (("self.assertIn\\('optional arguments:', message\\)") + "self.assertRegex(message, r'option(s|al arguments):')"))))) (build-system python-build-system) (propagated-inputs (list python-docutils python-mistune)) @@ -19432,14 +19525,21 @@ builds partial trees by inspecting living objects.") (define-public python-mando (package (name "python-mando") - (version "0.6.4") + (version "0.7.1") (source (origin (method url-fetch) (uri (pypi-uri "mando" version)) (sha256 (base32 - "0q6rl085q1hw1wic52pqfndr0x3nirbxnhqj9akdm5zhq2fv3zkr")))) + "001mikga36i811pbc95rb45m2kzivkx4xb0fn3pzl4xnnjcskfhq")))) (build-system python-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv"))))))) (propagated-inputs (list python-rst2ansi python-six)) (native-inputs @@ -19766,6 +19866,8 @@ while only declaring the test-specific fields.") (substitute* "setup.py" ((".*'future'.*") "") + (("mando>=0\\.6,<0\\.7") + "mando>=0.6") (("colorama==0.4.1") "colorama>=0.4.1")))) (replace 'check @@ -20842,31 +20944,29 @@ Rust Python extensions implemented with @code{PyO3} or @code{rust-cpython}.") (define-public python-pyclipper (package (name "python-pyclipper") - (version "1.1.0.post3") + (version "1.3.0.post3") (source (origin (method url-fetch) - (uri (pypi-uri "pyclipper" version ".zip")) + (uri (pypi-uri "pyclipper" version)) (sha256 - (base32 "164yksvqwqvwzh8f8lq92asg87hd8rvcy2xb5vm4y4ccvd5xgb7i")) + (base32 "0vqzbmq2di1jaj6230m5i1ld0mg6wdb1c6r6i5zli54varavr7v3")) (modules '((guix build utils))) (snippet '(begin ;; This file is generated by Cython. - (delete-file "pyclipper/pyclipper.cpp") #t)))) + (delete-file "src/pyclipper/_pyclipper.cpp") #t)))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (add-before 'build 'cythonize-sources (lambda _ - (with-directory-excursion "pyclipper" - (invoke "cython" "--cplus" "pyclipper.pyx"))))))) - (propagated-inputs - (list python-setuptools-scm-git-archive)) + (with-directory-excursion "src/pyclipper" + (invoke "cython" "--cplus" "_pyclipper.pyx"))))))) (native-inputs - (list python-cython python-pytest python-pytest-runner - python-unittest2 unzip)) + (list python-cython python-setuptools-scm + python-pytest python-pytest-runner)) (home-page "https://github.com/greginvm/pyclipper") (synopsis "Wrapper for Angus Johnson's Clipper library") (description @@ -21506,53 +21606,69 @@ based on the CPython 2.7 and 3.7 parsers.") (define-public python-typer (package (name "python-typer") - (version "0.3.2") + (version "0.6.1") (source (origin - ;; Building `python-typer` from the git repository requires the `flit-core` - ;; Python package that is not installed by `python-flit`. - (method url-fetch) - (uri (pypi-uri "typer" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/tiangolo/typer") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "00v3h63dq8yxahp9vg3yb9r27l2niwv8gv0dbds9dzrc298dfmal")))) + (base32 "1knv353qhkl2imav3jfp6bgq47m8wkkqhq1dzmqg2sv8rsy7zgl7")))) (build-system python-build-system) (arguments `(#:phases - (modify-phases %standard-phases - ;; Unfortunately, this doesn't seem to be enough to fix these two - ;; tests, but we'll patch this anyway. - (add-after 'unpack 'patch-shell-reference - (lambda _ - (substitute* "tests/test_completion/test_completion.py" - (("\"bash\"") (string-append "\"" (which "bash") "\"")) - (("\"/bin/bash\"") (string-append "\"" (which "bash") "\""))))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (setenv "HOME" "/tmp") ; some tests need it - - ;; This is for completion tests - (with-output-to-file "/tmp/.bashrc" (lambda _ (display "# dummy"))) - - (setenv "GUIX_PYTHONPATH" - (string-append (getcwd) ":" - (getenv "GUIX_PYTHONPATH"))) - (let ((disabled-tests (list "test_show_completion" - "test_install_completion"))) - (invoke "python" "-m" "pytest" "tests/" - "-k" - (string-append "not " - (string-join disabled-tests - " and not ")))))))))) + ,#~(modify-phases %standard-phases + ;; Unfortunately, this doesn't seem to be enough to fix these two + ;; tests, but we'll patch this anyway. + (add-after 'unpack 'patch-shell-reference + (lambda _ + (substitute* "tests/test_completion/test_completion.py" + (("\"bash\"") (string-append "\"" (which "bash") "\"")) + (("\"/bin/bash\"") + (string-append "\"" (which "bash") "\""))))) + (replace 'build + (lambda _ + (invoke "flit" "build"))) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (for-each + (lambda (wheel) + (format #true wheel) + (invoke "python" "-m" "pip" "install" + wheel (string-append "--prefix=" #$output))) + (find-files "dist" "\\.whl$")))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "HOME" "/tmp") ; some tests need it + + ;; This is for completion tests + (with-output-to-file "/tmp/.bashrc" + (lambda _ (display "# dummy"))) + + (setenv "GUIX_PYTHONPATH" + (string-append (getcwd) ":" + (getenv "GUIX_PYTHONPATH"))) + (let ((disabled-tests (list "test_show_completion" + "test_install_completion"))) + (invoke "python" "-m" "pytest" "tests/" + "-k" + (string-append "not " + (string-join disabled-tests + " and not ")))))))))) (propagated-inputs (list python-click)) (native-inputs - (list python-coverage python-pytest python-shellingham)) + (list python-coverage python-flit python-pytest python-rich + python-shellingham)) (home-page "https://github.com/tiangolo/typer") (synopsis - "Typer builds CLI based on Python type hints") + "Typer builds CLI based on Python type hints") (description - "Typer is a library for building CLI applications. It's based on + "Typer is a library for building CLI applications. It's based on Python 3.6+ type hints.") ;; MIT license (license license:expat))) @@ -23348,7 +23464,6 @@ Features: (list python-cfgv python-identify python-importlib-metadata - python-importlib-resources python-nodeenv python-pyyaml python-toml @@ -29733,8 +29848,6 @@ fashion.") (substitute* "prober.py" (("cmd = .cc") (string-append "cmd = \"" #$(cc-for-target))))))))) - (native-inputs - (list python-unittest2)) (home-page "http://semanchuk.com/philip/posix_ipc/") (synopsis "POSIX IPC primitives for Python") (description @@ -30411,7 +30524,7 @@ window managers.") (define-public i3-autotiling (package (name "i3-autotiling") - (version "1.6") + (version "1.6.1") (source (origin (method git-fetch) (uri (git-reference @@ -30420,7 +30533,7 @@ window managers.") (file-name (git-file-name name version)) (sha256 (base32 - "1hjlvg7095s322gb43r9g7mqlsy3pj13l827jpnbn5x0918rq9rr")))) + "1m8k3g83n2n1xws89dh20f3sy6753wvip9dzf6bssv2cz9ll7406")))) (build-system python-build-system) (arguments (list #:tests? #f)) ;no tests (native-inputs (list python-wheel)) @@ -30498,3 +30611,91 @@ both.") package. It can be used by type-checking tools like mypy, PyCharm, pytype etc. to check code that uses @code{orjson}.") (license license:asl2.0))) + +(define-public python-nanoid + ;; There are no tests on PyPi. + (let ((commit "061f9a598f310b0e2e91b9ed6ce725a22770da64") + (revision "0")) + (package + (name "python-nanoid") + (version "2.0.0") + (source + (origin + (method git-fetch) + (uri + (git-reference + (url "https://github.com/puyuan/py-nanoid") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 "0y1bcw0h27g8rkqq7cp33ywn0i0lp0q3rjixzkh4191y1dp9yf8s")))) + (build-system python-build-system) + (native-inputs (list python-pytest)) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (invoke "pytest"))))))) + (home-page "https://github.com/puyuan/py-nanoid") + (synopsis "Unique string ID generator") + (description + "This package provides a tiny, secure, URL-friendly, unique string ID +generator for Python.") + (license license:expat)))) + +(define-public python-misskey + (package + (name "python-misskey") + (version "4.1.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/YuzuRyo61/Misskey.py") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0rma8pdsjsy00cg76q6q4qki4xpldykmz1m6dl3w2bjjxfhlbaz5")))) + (build-system python-build-system) + (arguments (list #:tests? #f)) ;needs network + (propagated-inputs (list python-requests)) + (home-page "https://misskeypy.readthedocs.io") + (synopsis "Python bindings for Misskey's API") + (description + "This package provides access to Misskey's API. Misskey is a SNS +platform using the ActivityPub protocol.") + (license license:expat))) + +(define-public python-lief + (package + (name "python-lief") + (version "0.12.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/lief-project/LIEF") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1xzbh3bxy4rw1yamnx68da1v5s56ay4g081cyamv67256g0qy2i1")))) + (build-system python-build-system) + (native-inputs (list cmake)) + (arguments + (list + #:tests? #f ;needs network + #:phases #~(modify-phases %standard-phases + (replace 'build + (lambda _ + (invoke + "python" "setup.py" "--sdk" "build" + (string-append + "-j" (number->string (parallel-job-count))))))))) + (home-page "https://github.com/lief-project/LIEF") + (synopsis "Library to instrument executable formats") + (description + "@code{python-lief} is a cross platform library which can parse, modify +and abstract ELF, PE and MachO formats.") + (license license:asl2.0))) |