diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 115 |
1 files changed, 58 insertions, 57 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 5abc62d760..db99f4c7f2 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -667,14 +667,14 @@ also flexible enough to handle most nonstandard requirements.") (define-public r-matrix (package (name "r-matrix") - (version "1.6-0") + (version "1.6-1") (source (origin (method url-fetch) (uri (cran-uri "Matrix" version)) (sha256 (base32 - "17dpfqyr68dldlj4v26rjrwv6pv87czj9szqqp64fwczyy0fdszb")))) + "01qcrv4y1fm3ah5h4j90xvzlwvzcnbpa10cpg6k9hp363xh0pip5")))) (properties `((upstream-name . "Matrix"))) (build-system r-build-system) (propagated-inputs @@ -689,13 +689,13 @@ and operations on them using LAPACK and SuiteSparse.") (define-public r-nlme (package (name "r-nlme") - (version "3.1-162") + (version "3.1-163") (source (origin (method url-fetch) (uri (cran-uri "nlme" version)) (sha256 - (base32 "0rywlbbg76c8nx62h0fj49va1y59z1qrkfjc9ihs5bslambs4vds")))) + (base32 "12hj7icn0xgsm67awzf8x8afhckxmb98rci9c7gsizdp9x6gyikx")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) @@ -771,14 +771,14 @@ classification, regression and survival trees.") (define-public r-spatial (package (name "r-spatial") - (version "7.3-16") + (version "7.3-17") (source (origin (method url-fetch) (uri (cran-uri "spatial" version)) (sha256 (base32 - "01p42q72mb8b4fdm75723nj64r3l0d8px1l9fyklihay9jk6arg4")))) + "1msxbxz50qmzjxgix2vcq0f50b4cdvj8nz3qlilp397jrzc3w07i")))) (build-system r-build-system) (home-page "https://www.stats.ox.ac.uk/pub/MASS4/") (synopsis "Functions for kriging and point pattern analysis") @@ -791,14 +791,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "3.5-5") + (version "3.5-7") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "0xl4arr70xqc7rnix9x9w83985ry0wpcmfi79vh5h0jbal4sax8k")))) + "0bi76kr5xkcs98r795lz9nvsj6zzxq0w6zn1938z0ffx5b9js3nm")))) (build-system r-build-system) (propagated-inputs (list r-matrix)) @@ -1247,13 +1247,13 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.4.2") + (version "3.4.3") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "1jl3a9z668zjb2p2c01rxpgmjs5gc9gkxn8xqi7q8vrc1akhl8vh")))) + (base32 "0hx5j47y2fxrcg4fxavyn5jjycpwkmsiqsjh6kj7nwp7dg79mqjw")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -1532,13 +1532,13 @@ data derived from /etc/mime.types in UNIX-type systems.") (define-public r-markdown (package (name "r-markdown") - (version "1.7") + (version "1.8") (source (origin (method url-fetch) (uri (cran-uri "markdown" version)) (sha256 (base32 - "1cfgrlmbn54nsn0k568xdcg08dxb8flhsysmnfrhci0pa93rlayb")))) + "1az5l2dnrdfx36kcdi5x8qnrbwmylf0wqd6a4hg2l9m8q1vpgs8d")))) (build-system r-build-system) ;; Skip check phase because the tests require the r-knitr package to be ;; installed. This prevents installation failures. Knitr normally @@ -1904,14 +1904,17 @@ features require SQL translation to be provided by the package author.") (define-public r-acepack (package (name "r-acepack") - (version "1.4.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (cran-uri "acepack" version)) (sha256 (base32 - "1f98rpfjmhd92rdc3j004plyfpjailz6j0ycysbac0kgj83haxc2")))) + "14dccqpww3bv59236r0vr6bibhsafhbm7qshdjxp5ww3nw9cvzsv")))) + (properties + `((upstream-name . "acepack") + (updater-extra-inputs . ("gfortran")))) (build-system r-build-system) (inputs (list gfortran)) @@ -2177,7 +2180,7 @@ comparison and diagnostics.") (define-public python-pymc (package (name "python-pymc") - (version "5.7.1") + (version "5.7.2") (source (origin (method git-fetch) ; no tests in PyPI (uri (git-reference @@ -2186,7 +2189,7 @@ comparison and diagnostics.") (file-name (git-file-name name version)) (sha256 (base32 - "0ddb467qzwzzz3zhqbpks8n7mqqr7isskbirnxlfdmcwyyf4cq3q")))) + "1r3lxpfc782f0wphdqfgsskbz52i0gwgrmxb65307k6cqia69s3r")))) (build-system pyproject-build-system) (arguments (list #:tests? #f ; tests are too computationally intensive @@ -2384,14 +2387,14 @@ files in R. It is built on top of the libxml2 C library.") (define-public r-multitaper (package (name "r-multitaper") - (version "1.0-15") + (version "1.0-17") (source (origin (method url-fetch) (uri (cran-uri "multitaper" version)) (sha256 (base32 - "1gm3wr8xqpqiby7q1dr3zxim77v0bvvrqi0hlazf5g3gnkrp2zc3")))) + "1wqa2whcjxwjqg9z46i48dvrga17fdj63r05kg993r1fpriclc1l")))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -2715,16 +2718,16 @@ integers.") (define-public r-httr (package (name "r-httr") - (version "1.4.6") + (version "1.4.7") (source (origin (method url-fetch) (uri (cran-uri "httr" version)) (sha256 (base32 - "1cipxhsss77n2psik755y1s7dkyqhrs0yjch8cmqswr3xz5qcvcd")))) + "0fisvq3zydmqagn7lj6x98zxkcl7l95gfydl27zkigb7zg1fcm8m")))) (build-system r-build-system) (propagated-inputs - (list r-curl r-jsonlite r-openssl r-mime r-r6)) + (list r-curl r-jsonlite r-mime r-openssl r-r6)) (native-inputs (list r-knitr)) (home-page "https://github.com/hadley/httr") @@ -2960,13 +2963,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.12.4.1.0") + (version "0.12.6.1.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "1mf5dpsbjhfwalf4k3yhzgh0j1f40v1g7a3p6crm6xfp0k85jhq3")))) + "0saga8anaahyrvvynggg168756rv8d9gyq8sryjgnx5pp4jbz6ck")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -3052,13 +3055,13 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "2.23") + (version "2.24") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 "09f8gfa4cfjwqb44xdr832blbgknn4ciyisvcrpyz5x51iphi3b6")))) + (base32 "11ixspf7w5zsr02c5545w0ra7l9c8kb4bls97dhx5cgldnjfywrq")))) (properties `((upstream-name . "rmarkdown") (updater-extra-propagated-inputs . ("pandoc")))) @@ -3077,7 +3080,7 @@ certain criterion, e.g., it contains a certain regular file.") r-yaml pandoc)) (native-inputs - (list r-knitr)) + (list esbuild r-knitr)) (home-page "https://rmarkdown.rstudio.com") (synopsis "Convert R Markdown documents into a variety of formats") (description @@ -3088,20 +3091,17 @@ variety of formats.") (define-public r-gtable (package (name "r-gtable") - (version "0.3.3") + (version "0.3.4") (source (origin (method url-fetch) (uri (cran-uri "gtable" version)) (sha256 (base32 - "0fkv19h64cyxsadplvyzbpjliy9wlfg56hc8znvqg972g3cmi6ig")))) + "0xvrkhcv1896mf3n43mva2mrmk0d8np7sjrykpg1pv54f69h6ckh")))) (properties `((upstream-name . "gtable"))) (build-system r-build-system) (propagated-inputs - (list r-cli - r-glue - r-lifecycle - r-rlang)) + (list r-cli r-glue r-lifecycle r-rlang)) (native-inputs (list r-knitr)) (home-page "https://cran.r-project.org/web/packages/gtable") @@ -4011,13 +4011,13 @@ analysis of large sparse or dense matrices.") (define-public r-glmnet (package (name "r-glmnet") - (version "4.1-7") + (version "4.1-8") (source (origin (method url-fetch) (uri (cran-uri "glmnet" version)) (sha256 - (base32 "1a7af2658z9fmx0rcdx401lj86q73qkvsvlfnrp2bw4xv43bd85k")))) + (base32 "1znw1p1mi7nv39l7albcg6sfxj7a1jyjw85hb3ginv870z7fbnqx")))) (build-system r-build-system) (native-inputs (list gfortran r-knitr)) @@ -4360,13 +4360,13 @@ vignettes.") (define-public r-mvtnorm (package (name "r-mvtnorm") - (version "1.2-2") + (version "1.2-3") (source (origin (method url-fetch) (uri (cran-uri "mvtnorm" version)) (sha256 (base32 - "047y4sv1ydvszmzrssywhqfhx2mcrlbkypczgbh380wk7yrncmbg")))) + "1iy65fc2y0af6ma9f6lvzd5zh7zm60cqihdhr58ksc75ymfxrnia")))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -4408,13 +4408,13 @@ memory usage.") (define-public r-viridis (package (name "r-viridis") - (version "0.6.3") + (version "0.6.4") (source (origin (method url-fetch) (uri (cran-uri "viridis" version)) (sha256 (base32 - "1z0zgwf3xlwxagphcavkxm09i2pbqmdxil8c39h1jwlr8nbvfq2a")))) + "1p6n85js15lx0zx07v2dxnb6wx4xzlbvrljf0x6vxy4gqf5si8hb")))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 r-gridextra r-viridislite)) @@ -4547,14 +4547,14 @@ It uses and relies on grid graphics and formal (S4) classes and methods.") (define-public r-purrr (package (name "r-purrr") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "purrr" version)) (sha256 (base32 - "18ibdyd9dyqba1w208pplgasmjpg5dhg4dni8165ld9r6nz12y8a")))) + "0qxvifs5gakjbivs8dgz6nrp6df2ypr3c4dlj84gyga3i2xwc6rc")))) (build-system r-build-system) (propagated-inputs (list r-cli r-lifecycle r-magrittr r-rlang r-vctrs)) @@ -4693,14 +4693,14 @@ data behind them) can be viewed and modified in a web browser.") (define-public r-biased-urn (package (name "r-biased-urn") - (version "2.0.10") + (version "2.0.11") (source (origin (method url-fetch) (uri (cran-uri "BiasedUrn" version)) (sha256 (base32 - "0jv0zvz1zs34h12zdgn3lqmn7hfkk2z6fkwbd9mlyddf34rkvfqv")))) + "0dvmkrdmhfh4swilyxf10y856kx0zf9sj1gc0g62bm6r5jhz35b2")))) (properties `((upstream-name . "BiasedUrn"))) (build-system r-build-system) (home-page "https://www.agner.org/random/") @@ -4982,14 +4982,14 @@ existing packages provide.") (define-public r-sfsmisc (package (name "r-sfsmisc") - (version "1.1-15") + (version "1.1-16") (source (origin (method url-fetch) (uri (cran-uri "sfsmisc" version)) (sha256 (base32 - "1rl1gh79mkpg1ms9mrfyd6yrvvlxap01yx11mhngd1x2hg7l5yja")))) + "0v2325f3115yp48s0ddiiqwxlg2zf5xzc21xxd0cbziw3rk4l6si")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/sfsmisc") (synopsis "Utilities from \"Seminar fuer Statistik\" ETH Zurich") @@ -5585,14 +5585,14 @@ data for species delimitation, nearest neighbor based noise detection.") (define-public r-deoptimr (package (name "r-deoptimr") - (version "1.1-0") + (version "1.1-1") (source (origin (method url-fetch) (uri (cran-uri "DEoptimR" version)) (sha256 (base32 - "15nnix9k5x6hixfk1pvmkq1bmi3nbw4mf16ng5b7b8qakj8h8h8n")))) + "1appp5xgayafda6f5pcdsxaskqs831rb21znx44r8nyb9gvg0f6z")))) (properties `((upstream-name . "DEoptimR"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/DEoptimR") @@ -5916,22 +5916,23 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.95") + (version "5.97") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 - (base32 "1k4n5armw4lfyy4q8llnrpgvcw7s5n8w9zfff9rr5ggbrqgah1ab")))) + (base32 "18bdcxm2f8gc2bxdxrk80dcafl8d5snckp0913pkdsfyfrbxxrw7")))) (build-system r-build-system) (arguments - `(#:phases - (modify-phases %standard-phases + (list + #:phases + '(modify-phases %standard-phases + ;; This is needed for building vignettes (add-after 'unpack 'set-HOME (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs - (list gfortran - r-r-rsp)) ;for vignettes + (list gfortran r-r-rsp)) ;for vignettes (propagated-inputs (list r-mass r-matrix r-matrixmodels r-sparsem r-survival)) (home-page "https://www.r-project.org") @@ -6269,18 +6270,18 @@ genome-wide association studies can be analyzed efficiently.") (define-public r-cairo (package (name "r-cairo") - (version "1.6-0") + (version "1.6-1") (source (origin (method url-fetch) (uri (cran-uri "Cairo" version)) (sha256 (base32 - "1lxpmzy6k8y9b6g7x68x0giy8bblxmbc4q136hkzajmailfsqqn7")))) + "051pqbhfsr3dki2wiycbwvka850y4h4gyhvnjjf907q8sz2cykg6")))) (properties `((upstream-name . "Cairo"))) (build-system r-build-system) (inputs - (list cairo libxt zlib)) + (list cairo harfbuzz icu4c libjpeg-turbo libtiff zlib)) (native-inputs (list pkg-config)) (home-page "https://www.rforge.net/Cairo/") @@ -6873,14 +6874,14 @@ mediation and estimating power.") (define-public r-clubsandwich (package (name "r-clubsandwich") - (version "0.5.9") + (version "0.5.10") (source (origin (method url-fetch) (uri (cran-uri "clubSandwich" version)) (sha256 (base32 - "0r43qyff1v986snvnynsj02kp50npyi1qln1gwgpl3n1syngzcn8")))) + "0qx4qq0k01q06hrs348n417pf338dyfbcy2vsi0y3ap6y1rb7w6s")))) (properties `((upstream-name . "clubSandwich"))) (build-system r-build-system) (propagated-inputs |