diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 93 |
1 files changed, 45 insertions, 48 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a1c6394029..b05740dc79 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13288,55 +13288,52 @@ secondary structure and comparative analysis in R.") (license license:gpl3+))) (define-public rcas-web - (package - (name "rcas-web") - (version "0.1.0") - (source - (origin - (method url-fetch) - (uri (string-append "https://github.com/BIMSBbioinfo/rcas-web/" - "releases/download/v" version - "/rcas-web-" version ".tar.gz")) - (sha256 - (base32 - "0wq951aj45gqki1bickg876i993lmawkp8x24agg264br5x716db")))) - (build-system gnu-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'configure 'find-RCAS - ;; The configure script can't find non-1.3.x versions of RCAS because - ;; its R expression ‘1.10.1 >= 1.3.4’ evaluates to false. - (lambda _ - (substitute* "configure" - (("1\\.3\\.4") "0.0.0")) - #t)) - (add-after 'install 'wrap-executable - (lambda* (#:key inputs outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (json (assoc-ref inputs "guile-json")) - (redis (assoc-ref inputs "guile-redis")) - (path (string-append - json "/share/guile/site/2.2:" - redis "/share/guile/site/2.2"))) - (wrap-program (string-append out "/bin/rcas-web") - `("GUILE_LOAD_PATH" ":" = (,path)) - `("GUILE_LOAD_COMPILED_PATH" ":" = (,path)) - `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE"))))) - #t))))) - (inputs - `(("r-minimal" ,r-minimal) - ("r-rcas" ,r-rcas) - ("guile" ,guile-2.2) - ("guile-json" ,guile-json-1) - ("guile-redis" ,guile2.2-redis))) - (native-inputs - (list pkg-config)) - (home-page "https://github.com/BIMSBbioinfo/rcas-web") - (synopsis "Web interface for RNA-centric annotation system (RCAS)") - (description "This package provides a simple web interface for the + (let ((commit "71c93e3835653beb4eaa6e89b860bee3779729b8") + (revision "2")) + (package + (name "rcas-web") + (version (git-version "0.1.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BIMSBbioinfo/rcas-web") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0232g0f7g0w5cgaib462zbfssvfq8i0iqv5b5wfmbrbn0sw99l9a")))) + (build-system gnu-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'install 'wrap-executable + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((json #$(this-package-input "guile-json")) + (redis #$(this-package-input "guile-redis")) + (path (string-append + json "/share/guile/site/3.0:" + redis "/share/guile/site/3.0"))) + (wrap-program (string-append #$output "/bin/rcas-web") + `("GUILE_LOAD_PATH" ":" = (,path)) + `("GUILE_LOAD_COMPILED_PATH" ":" = (,path)) + `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))))))))) + (inputs + (list r-minimal + r-rcas + guile-3.0 + guile-json-4 + guile-redis)) + (native-inputs + (list autoconf + automake + pkg-config)) + (home-page "https://github.com/BIMSBbioinfo/rcas-web") + (synopsis "Web interface for RNA-centric annotation system (RCAS)") + (description "This package provides a simple web interface for the @dfn{RNA-centric annotation system} (RCAS).") - (license license:agpl3+))) + (license license:agpl3+)))) (define-public r-chipkernels (let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372") |