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2024-05-05gnu: linux-libre 4.19: Update to 4.19.313.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.313. (linux-libre-4.19-pristine-source): Update hash. Change-Id: I22e9d175b537164efcde4cec5188c26bae8d2fca Signed-off-by: Leo Famulari <leo@famulari.name>
2024-05-05gnu: linux-libre 5.4: Update to 5.4.275.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.275. (linux-libre-5.4-pristine-source): Update hash. Change-Id: Ifcd296510ae1c7e81a4a5fa3c8eb6e304e2d662d Signed-off-by: Leo Famulari <leo@famulari.name>
2024-05-05gnu: linux-libre 5.10: Update to 5.10.216.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.216. (linux-libre-5.10-pristine-source): Update hashes. Change-Id: Ia14fa905e109c81cc8397d1151cc327d6e1ea25a Signed-off-by: Leo Famulari <leo@famulari.name>
2024-05-05gnu: linux-libre 5.15: Update to 5.15.158.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.158. (linux-libre-5.15-pristine-source): Update hash. Change-Id: Ib2b12fac8301ced17e6e068a1e68768e200d5a24 Signed-off-by: Leo Famulari <leo@famulari.name>
2024-05-05gnu: linux-libre 6.1: Update to 6.1.90.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.90. (linux-libre-6.1-pristine-source): Update hash. Change-Id: Ic1ef7176af2055db78b58458bb9327bce5789d48
2024-05-05gnu: linux-libre 6.6: Update to 6.6.30.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.30. (linux-libre-6.6-pristine-source): Update hash. Change-Id: Ic261985e2c199a80068e2898684d522939b98a89
2024-05-05gnu: linux-libre-6.8-gnu-revision: Update to 6.8.9.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-6.8-version): Update to 6.8.9. (linux-libre-6.8-pristine-source): Update hash. Signed-off-by: Leo Famulari <leo@famulari.name> Change-Id: I4f8031b1db5e19e98e5f61377a45912f91d403f7
2024-05-05gnu: Add mupen64plus-video-gliden64.Maxim Cournoyer
* gnu/packages/emulators.scm (mupen64plus-video-gliden64): New variable. Change-Id: I09782d0c793062c3fa448b5376a97a5f3356ea5c
2024-05-05gnu: mupen64plus-ui-console: Modernize.Maxim Cournoyer
* gnu/packages/emulators.scm (mupen64plus-ui-console) [propagated-inputs]: Remove legacy mupen64plus-video-glide64 plugin. [arguments]: Use gexps. Change-Id: I33ce0ef1e7ea87b382f74aae07098bcf0e5f30e0
2024-05-05gnu: mupen64plus-video-rice: Adjust synopsis.Maxim Cournoyer
* gnu/packages/emulators.scm (mupen64plus-video-rice): Adjust synopsis. Change-Id: I3708c46593a096f632d9268200c312a434525331
2024-05-05gnu: mupen64plus-video-glide64mk2: Fix synopsis.Maxim Cournoyer
* gnu/packages/emulators.scm (mupen64plus-video-glide64mk2): Fix synopsis. Change-Id: I6f41e9a4b70faa0e2342a4ffc2803873a8dc8f08
2024-05-05gnu: mupen64plus-video-glide64: Fix synopsis.Maxim Cournoyer
* gnu/packages/emulators.scm (mupen64plus-video-glide64): Fix synopsis. Change-Id: I0b2b4630dcf3c5dc5ee385e82c71f92694cf2abe
2024-05-05gnu: mupen64plus-video-arachnoid: Fix synopsis.Maxim Cournoyer
* gnu/packages/emulators.scm (mupen64plus-video-arachnoid): Fix synopsis. Change-Id: Ic560e6780965526723907aff9d2af6c48f580508
2024-05-05gnu: mupen64plus-rsp-z64: Fix synopsis.Maxim Cournoyer
* gnu/packages/emulators.scm (mupen64plus-rsp-z64): Fix synopsis. Change-Id: I97d5b8e70949f2a5198ce45b0a1fe24a089078ba
2024-05-05gnu: mupen64plus-rsp-hle: Fix synopsis.Maxim Cournoyer
* gnu/packages/emulators.scm (mupen64plus-rsp-hle): Fix synopsis. Change-Id: I7235da472ecd1856fdc33ed08d92f9f05b29ba3a
2024-05-05gnu: mupen64plus-audio-sdl: Fix synopsis.Maxim Cournoyer
* gnu/packages/emulators.scm (mupen64plus-audio-sdl): Fix synopsis. Change-Id: I08b2778cf625699d72d5fbab2b23d86ff06a1be0
2024-05-06gnu: Add python-pyahocorasick.nafkhamdc
* gnu/packages/bioinformatics.scm (python-pyahocorasick): New variable. Change-Id: I468bed450351b49cf81344a328841cd77f67cb4e Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-05-06gnu: Add r-memes.nafkhamdc
* gnu/packages/bioconductor.scm (r-memes): New variable. Change-Id: Ibdf5173d35ef81d27da6831148e66be83f856deb Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-05-05gnu: python-graphtools: Fix tests.wip-python-teamRicardo Wurmus
* gnu/packages/graph.scm (python-graphtools)[arguments]: Add 'patch-tests phase. Change-Id: I5ffb4321ddd7e33e812bcb1cf67cee069b07b5f8
2024-05-05gnu: python-gpy: Update to 1.13.1.Ricardo Wurmus
* gnu/packages/python-science.scm (python-gpy): Update to 1.13.1. [source]: Remove snippet. [build-system]: Use pyproject-build-system. [arguments]: Remove phase 'remove-plotting-tests; add phase 'compatibility. [native-inputs]: Remove python-nose and python-climin; add python-pytest, python-matplotlib, and python-pods. Change-Id: I1ed95e3ad2e8444979fd2cf272d7f3104b1bf2ec
2024-05-05gnu: python-pygsp: Add missing input.Ricardo Wurmus
* gnu/packages/graph.scm (python-pygsp)[native-inputs]: Add python-pytest. Change-Id: I94cd4e160dcbecfbb491c0d101bcbeb761189876
2024-05-05gnu: python-paramz: Update to 0.9.6.Ricardo Wurmus
* gnu/packages/python-science.scm (python-paramz): Update to 0.9.6. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-nose. Change-Id: I62a2f7ecf600f48da74f4d233e108360a583d5ca
2024-05-05gnu: python-pingouin: Update to 0.5.4.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.4. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase; add 'sklearn-compatibility phase; skip one test. Change-Id: I8d13f15558eadee0547f04bc4bb89a0fd0e0767b
2024-05-05gnu: python-liana-py: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-liana-py): Update to 1.1.0. [arguments]: Adjust tests; add phase 'relax-requirements. [propagated-inputs]: Remove python-mofax; add python-numpy. [native-inputs]: Remove python-numpy; add python-poetry-core. Change-Id: I279be08ac3ac73d9a724f59652f2f0d333607696
2024-05-05gnu: python-plotnine: Fix version string.Ricardo Wurmus
* gnu/packages/python-science.scm (python-plotnine)[native-inputs]: Add python-setuptools-scm. Change-Id: I0fc2f3ad7edcdaaa5e3bf9774bc6840c8fbeb727
2024-05-05gnu: python-plotnine: Disable test because of harmless warning.Ricardo Wurmus
* gnu/packages/python-science.scm (python-plotnine)[arguments]: Disable test_save_method which prints an unexpected warning.. Change-Id: I28a20b85ee549311bed534efbf801db930419ca9
2024-05-05gnu: python-mapie: Disable strict tests.Ricardo Wurmus
* gnu/packages/statistics.scm (python-mapie)[arguments]: Disable two tests. Change-Id: I2c72f6f2d0136db5f97ba709a468a3aebd447d5d
2024-05-05gnu: python-scikit-learn-extra: Disable a validation test.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-scikit-learn-extra)[arguments]: Disable one test. Change-Id: I1309cb6a82dee1a714ddec59aa90692ccfcd885b
2024-05-05gnu: python-cooltools: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-cooltools): Update to 0.7.0. [build-system]: Use pyproject-build-system. [arguments]: Remove. Change-Id: I4112bf0cbc309df551087b8bb3cb1d37af7f751d
2024-05-05gnu: python-bioframe: Update to 0.6.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-bioframe): Update to 0.6.4. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase; add 'pre-check phase. Use #:test-flags to disable tests that require internet access. [native-inputs]: Add python-hatchling. [propagated-inputs]: Add python-pyyaml. Change-Id: Iad1c8c6ef8f52886e398e9c4d2d384c5fce075c6
2024-05-05gnu: python-verde: Add missing input.Ricardo Wurmus
* gnu/packages/geo.scm (python-verde)[native-inputs]: Add python-pytest. Change-Id: I82b844627f27cfe60e42050bb37d092b3d9a43c1
2024-05-05gnu: python-statmake: Adjust tests and version checks.Ricardo Wurmus
* gnu/packages/fontutils.scm (python-statmake)[arguments]: Disable broken test; relax check for cattrs. Change-Id: Ibd479743160d3591088d17635e26484e7de5250f
2024-05-05gnu: python-decoupler-py: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-decoupler-py): Update to 1.6.0. [arguments]: Do not disable test_plot_volcano test. Change-Id: I44a31d30e8a03d2d1ffd86383c8bc6db79628def
2024-05-05gnu: python-omnipath: Update to 1.0.8.Ricardo Wurmus
* gnu/packages/python-web.scm (python-omnipath): Update to 1.0.8. [arguments]: Disable tests that need internet access. [native-inputs]: Add python-pytest-socket. Change-Id: Ib5856a1a25835d43918d9fe565d0262dded70eed
2024-05-05gnu: barectf: Use python-termcolor-1.Ricardo Wurmus
* gnu/packages/instrumentation.scm (barectf)[propagated-inputs]: Use python-termcolor-1. Change-Id: I8284db970d3cee8988318be7f1180aa933ab461a
2024-05-05gnu: Add python-termcolor-1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-termcolor-1): New variable. Change-Id: I1aca97b6b7976cb698131c3a0be73e4798bef6d6
2024-05-05gnu: python-pytest-shutil: Disable a test.Ricardo Wurmus
* gnu/packages/python-check.scm (python-pytest-shutil)[build-system]: Use pyproject-build-system. [arguments]: Disable test_pretty_formatter. Change-Id: I862320feab5b3c6e375bf652deced6a631dfc575
2024-05-05gnu: python-cleanlab: Update to 2.6.3.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-cleanlab): Update to 2.6.3. [arguments]: Disable tests that require "datasets" package; add phase 'remove-datasets. Change-Id: I6af99e3e749a10515328db4874974a3504658352
2024-05-05gnu: python-termcolor: Update to 2.4.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-termcolor): Update to 2.4.0. [build-system]: Use pyproject-build-system. [arguments]: Add 'fix-pyproject build phase. [native-inputs]: Add python-hatch-vcs, python-hatchling, python-pytest, and python-pytest-cov. Change-Id: I1b824ca6f125305169c3f64f00dbacbeb77d0ed0
2024-05-05gnu: python-hicexplorer: Update to 3.7.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-hicexplorer): Update to 3.7.4. [source]: Remove obsolete snippet. [arguments]: Remove obsolete phase 'scipy-compatibility. [propagated-inputs]: Replace python-cleanlab-1 with python-cleanlab. Change-Id: Iac9a24cc4551b7d7e1d41d1f07a6db6d620b119e
2024-05-05gnu: snakemake-5: Patch version string.Ricardo Wurmus
* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Add phase 'patch-version. Change-Id: I647625e9d26b2ee06274a0c5bb844ccb87035537
2024-05-05gnu: snakemake-5: Make compatible with tabulate 0.9.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Add phase 'tabulate-compatibility. Change-Id: I0b0ddafe9c2da91dbe10a584eb6fa0a3d5d62e87
2024-05-05gnu: snakemake: Fetch from git repository.Ricardo Wurmus
* gnu/packages/python-xyz.scm (snakemake)[source]: Fetch from git repository to include tests. [arguments]: Enable tests; add 'pre-check phase. [build-system]: Use pyproject-build-system. [native-inputs]: Add git-minimal, python-wrapper, python-pytest, python-pandas, and python-requests-mock. Change-Id: I32e9d36752cc91eacb8f05138d969834dbbce817
2024-05-05gnu: snakemake-7: Make compatible with tabulate 0.9.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (snakemake-7)[arguments]: Add phase 'tabulate-compatibility. Change-Id: Ie6b2a7d65bc76e3df7c3946ba4533b301f5a3610
2024-05-05gnu: snakemake-6: Make compatible with tabulate 0.9.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (snakemake-6)[arguments]: Add phase 'tabulate-compatibility. Change-Id: I0471726e2000af76871e2542ed347cd1727bf0c9
2024-05-05gnu: python-jsonpickle: Update to 3.0.4.Ricardo Wurmus
* gnu/packages/python-web.scm (python-jsonpickle): Update to 3.0.4. [build-system]: Use pyproject-build-system. [arguments]: Use test-flags; add 'pre-check phase. [propagated-inputs]: Add python-importlib-metadata. [native-inputs]: Add python-bson, python-ecdsa, python-feedparser, python-pymongo, python-pytest, python-pytest-benchmark, python-pytest-cov, python-pytest-enabler, python-setuptools, python-setuptools-scm, python-simplejson, python-sqlalchemy, python-ujson, and tzdata-for-tests. Change-Id: I99e41ae2652ce02b090ee2b99a7b850a19b5f353
2024-05-05gnu: python-imbalanced-learn: Update to 0.12.2.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-imbalanced-learn): Update to 0.12.2. [native-inputs]: Remove python-numpydoc. Change-Id: I8af0017f76d5ab3a2d55a96c0ace6be22d57fb66
2024-05-05gnu: tadbit: Add R to inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (tadbit)[inputs]: Add r-minimal. Change-Id: I4929dd89ddd27b4fcbd8b3a00b8ab8f3586945d2
2024-05-05gnu: tadbit: Patch for compatibility with latest scipy.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (tadbit)[arguments]: Add phase 'scipy-compatibility. Change-Id: Ib25b9cde75f0505c347c4ff470e61f06fb162839
2024-05-05gnu: tadbit: Update to 1.0.1-2.2838129.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (tadbit): Update to 1.0.1-2.2838129. Change-Id: I2c220ae37cd196ca508d30aefc24938cce985527
generated by cgit v1.2.3 (git 2.46.0) at 2024-08-26 09:27:38 +0000